DY258815

Overview
NameDY258815
Unique NameDY258815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1302
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1253 contig Ccv1_Contig1253:1..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258815 vs. ExPASy Swiss-Prot
Match: PM34_DICDI (Mitochondrial substrate carrier family protein Q OS=Dictyostelium discoideum GN=mcfQ PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.096e-14
Identity = 44/130 (33.85%), Postives = 75/130 (57.69%), Query Frame = 3 
Query:  231 TYPLQTVNARQQTERDVKKEKRKL--------GTVAQMCQVVKHEGWGRLYGGLTPSIVGTAASQGVYYYFYQIFRNNAEVAALEHKKRGIGDGSVGMLSSLVVAALAGCVNVLLTNPIWVVVTRMQTHT 596
            TYP  TV+ R Q ++  +++ ++          ++    +++K E W  LY GL  +++G  AS  VYYY+Y + ++ +    L++K+       +G + +L +AALAGC NVL T PIWVV TR+Q ++
Sbjct:   38 TYPFSTVSTRLQVQQKKQQQGQQSEITTVPYKNSIDAFKRIIKEENWRTLYSGLKSALIGIGASSFVYYYWYTLLKSIS--LKLKNKQE------LGTIENLAIAALAGCANVLTTLPIWVVNTRLQINS 159
The following BLAST results are available for this feature:
BLAST of DY258815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PM34_DICDI1.096e-1433.85Mitochondrial substrate carrier family protein Q O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3CD05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258815 ID=DY258815; Name=DY258815; organism=Citrus clementina; type=EST; length=1302bp
CTTTTAAAGCGCAGCGACTGAGAATACTGGATGCCAAAAGCCCAAAAGCA
TGCGCGCAATTACATTAAATTTCTCTCTCTGTTTAGAAACTTAGATCGAT
TTGCAATTTATTTTCCGAGAAAATAACCCGTTGGAAATTTTCTCGGGAAA
GTTGTGGTGACTATATTATGTCGGACGCTTTGATCAATGGACTGGCTGGT
GCTGGTGGCGGGATCATCGCTCAACTCATCACTTATCCCCTTCAAACTGT
AAATGCTCGTCAACAGACCGAGCGTGATGTTAAGAAAGAGAAGAGGAAGC
TAGGAACTGTTGCACAAATGTGTCAGGTTGTAAAACATGAAGGATGGGGA
CGGTTGTATGGAGGTTTAACACCGTCTATTGTCGGTACAGCTGCGTCTCA
GGGTGTTTACTATTATTTCTATCAAATATTCAGGAATAATGCTGAAGTTG
CCGCACTTGAACATAAAAAGAGAGGGATTGGTGATGGATCGGTTGGGATG
CTTTCATCACTTGTTGTGGCTGCCTTGGCTGGGTGTGTGAATGTGTTGTT
GACAAACCCTATTTGGGTAGTTGTTACCCGCATGCAGACTCATACAAAAA
CATTGAAAAAATCCAAGCCCTGTCGTTCAGAGTTAACTTCCTCCAAAAAA
AGTAGTCATGCCACAGTTGACCCTCCTCCTTTTGCTACTAGCCATGCGAA
TTCAGAAATCCAATAATGAAGGCCGGACTAAGGGGGCTTTTGGAAAAGTG
TATTCCCTACATTAGATATGGGGCAGCCAATCTTTGATACAATTAATGTT
GAAGGAAACCATGGTAAAAAAGGATAACGGAAAAAAACGGACCTGAAGAA
AGATGAAAAAAAGTGGAATAACCTGTCTAAAAGAATTTTTCTTTAAGGAG
CTCTGGGCAAACTTTGAAGCGACCATTTGAAAAATAATCCCTGTCATGTG
TTTAGAGGGGAAAAAGTTCACCCCAAATAAATTTAACAAATGTGGGTGAA
AAGGGAACAAATATAAAAGGCGAATGTGCAGTCGCACGCCGGAAAAAAGA
GATCCCAAAAATAAGAGGTATCTGTGAGGTCTTTACCCGCGAGAGCGGGG
GAACCAAACAGAATGGATAACAGGGCTCTCGTTGGCACGTCCGCATTATA
ATTGCGTTGGTGGAAGGTGTGAAAGAAAAAACATTCTTCAAGGAGGGGTG
ACTACACCCATCGGTCGTTGTAAGGCGCGCCCACATCAAGAATAGACAAC
ACCAGTATAGAAAAAAGACAAAGATCGAGGGCTCAGTACAGAAACCGACA
AG
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