DY258825

Overview
NameDY258825
Unique NameDY258825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1036
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258825_ssr393 microsatellite DY258825_ssr393:393..404. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15075 contig Ccv1_Contig15075:107..1142. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA727_ARATH (Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 6.177e-108
Identity = 193/238 (81.09%), Postives = 208/238 (87.39%), Query Frame = 1
Query:   76 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF*C 789
            M+QKGLIYSFV+KGTVVLAEHT YSGNFSTIA+QCLQKLP +SSKYTYSCDGHTFNFL+D+GFVFLVVADES GRSVPFVFLERVK+DFK+RY ASI+N+E HPLA           RFS+AYNLDREFGP LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGE+IELLVDKTENLQFQADSFQRQGRQLRR+MWLQ+LQMKLM            W+VACGGF C
Sbjct:    1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVFLVVADESTGRSVPFVFLERVKEDFKKRYEASIKNDERHPLADEDEDDDLFGDRFSVAYNLDREFGPILKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGEKIELLVDKTENLQFQADSFQRQGRQLRRKMWLQSLQMKLMVAGAVFSFILIVWVVACGGFKC 238          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA725_ARATH (Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 1.100e-72
Identity = 139/265 (52.45%), Postives = 185/265 (69.81%), Query Frame = 1
Query:    4 SLSLFLDSKFIRR---LSFPELRNWKEMNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF*C 789
            SLSL+ +SK   R     F  LR  + M Q+ LIYSFV++GTV+L E+T + GNF+ +A QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA ESVGR +P  FLERVK+DF +RYG                           A +L+REFG +LKEHMQYC+ HP+E+SKL+K+KAQ+TEVKG+MM+NIEKVLDRGE+IELLVDKTENL+ QA  F+ QG ++RR+MW +N+++KL+             L  CGGF C
Sbjct:   39 SLSLWWNSKNRIRGCVWFFFLLRVTRTMGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQ-------------------ANSLNREFGSKLKEHMQYCVDHPDEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIITLILIIILSVCGGFKC 284          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA722_ARATH (Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 6.038e-71
Identity = 129/238 (54.20%), Postives = 172/238 (72.27%), Query Frame = 1
Query:   76 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF*C 789
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L+++GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIEKVLDRGE+IELLVDKTENL+ QA  F+ QG Q+RR+MW QN+++KL+             L  CGGF C
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIALILIIILSICGGFNC 219          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA726_ARATH (Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=2 SV=2)

HSP 1 Score: 266.159 bits (679), Expect = 2.295e-70
Identity = 127/238 (53.36%), Postives = 170/238 (71.43%), Query Frame = 1
Query:   76 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF*C 789
            M Q+ LIYSFV++GTV+LAE+T + GNF+++A QCLQKLP+S++K+TY+CDGHTFN+L D+GF + VV  ES GR +P  FLERVK+DF +RYG    +                      A +L++EFG +LKEHMQYC  HPEE+SKLSK+KAQ+TEVKG+MM+NIEKVLDRGE+IELLVDKTENL+ QA  F+ QG +++R++W +N+++KL+             L  C GF C
Sbjct:    1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAK-------------------ANSLNKEFGSKLKEHMQYCADHPEEISKLSKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKMKRKLWFENMKIKLIVFGIIVALILIIILSVCHGFKC 219          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA721_ARATH (Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.487e-69
Identity = 128/238 (53.78%), Postives = 170/238 (71.43%), Query Frame = 1
Query:   76 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF*C 789
            M Q+ LIYSFV++GTV+L E T + GNF++IA QCLQKLP+S++K+TY+CDGHTFN+L++ GF + VVA +S GR +P  FLERVK+DF +RYG                         + A +L++EFG +LKEHMQYCM HP+E+SKL+K+KAQ++EVKG+MM+NIEKVLDRGE+IELLVDKTENL+ QA  F+  G Q+RR+MWLQN+++KL+             L  C GF C
Sbjct:    1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGG-------------------KAATAQANSLNKEFGSKLKEHMQYCMDHPDEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMKIKLIVLAIIIALILIIVLSVCHGFKC 219          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA724_ARATH (Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 2.543e-61
Identity = 113/239 (47.28%), Postives = 163/239 (68.20%), Query Frame = 1
Query:   76 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF*C 789
            M Q+  IYSFV++GT++LAE+T ++GNF +IA QCLQKLP+SS SK+TY+CD HTFNFL++ G+ + VVA +S+ + +   FLERVK DFK+RYG    +                    +IA +L++EFGP +KEHM Y + H EE+ KL K+KAQ++EVK IM++NI+K +DRGE + +L DKTENL+ QA  +++QG Q+RR++W QN+++KL+            W+  C GF C
Sbjct:    1 MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKAST-------------------AIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLIKVKAQVSEVKSIMLENIDKAIDRGENLTVLTDKTENLRSQAQEYKKQGTQVRRKLWYQNMKIKLVVLGILLLLVLIIWISVCHGFNC 220          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA723_ARATH (Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.348e-53
Identity = 105/238 (44.12%), Postives = 151/238 (63.45%), Query Frame = 1
Query:   76 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF*C 789
            M Q+ L YSF+++GTV+L E T + GNF+++A Q L+ LP+S++K+TY+CDGHTFN L+++GF + VVA +S GR +P  FLERVK+DF +RYG      +                    A +L++EFG  LKEHMQYCM HP+E+S L+K KAQ++EVK +MM+NIEKVL RG   E+L     + + Q  +F  +  Q++R+ W QN+++KL+             L  CGGF C
Sbjct:    1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQ-------------------ANSLNKEFGSNLKEHMQYCMDHPDEISNLAKAKAQVSEVKSLMMENIEKVLARGVICEML----GSSESQPQAFYIKRTQMKRKKWFQNMKIKLIVLAIIIALILIIILSVCGGFNC 215          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA713_ARATH (Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 4.997e-33
Identity = 76/212 (35.85%), Postives = 130/212 (61.32%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKL 720
            +I++ V++GTVVL+E ++ S N S+I+ Q L+KLP   S S  +YS D + F+     G   L +ADE+ GR++PF FL+ +   F + YG +I + +                    AY+++ EF   L + M++  + P    ++S++K ++++V+ +M++NI+KVLDRGER+ELLVDKTEN+Q     F++Q R+ R  MW +N+++ +
Sbjct:    3 IIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDGLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQ--------------------AYSMNDEFSRVLSQQMEFYSNDPNA-DRMSRIKGEMSQVRNVMIENIDKVLDRGERLELLVDKTENMQGNTFRFRKQARRYRTIMWWRNVKLTI 193          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA711_ARATH (Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 6.527e-33
Identity = 74/212 (34.91%), Postives = 126/212 (59.43%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASS-SKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLM 723
            ++Y+ V++GTVVL+E T+ S N STIA Q L+K+P  + S  +YS D + F+     G   L +A+E+ GR +PF FLE +   F + YG ++                      ++AY ++ EF   L + + Y  + P    +++++K ++ +V+G+M++NI+KVLDRGER+ELLVDKT N+Q     F++Q R+ R  +W +N ++ ++
Sbjct:    3 ILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGLTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHT--------------------ALAYAMNEEFSRVLSQQIDYYSNDPNA-DRINRIKGEMNQVRGVMIENIDKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVL 193          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA712_ARATH (Vesicle-associated membrane protein 712 OS=Arabidopsis thaliana GN=VAMP712 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.042e-30
Identity = 73/212 (34.43%), Postives = 122/212 (57.55%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKY-TYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLM 723
            ++Y+ V++GTVVLAE ++ S N STIA Q L+K+P +   + +YS D + F+     G   L +ADE  GR +PF FLE +   F + YG +I + +                    AY ++ EF   L + ++Y  + P     +S++K ++ +V+ +M++NI+ +LDRGER+ELLVDKT N+Q     F++Q R+    +W +N ++ L+
Sbjct:    3 ILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGLTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQ--------------------AYAMNDEFSRVLNQQIEYYSNDPNA-DTISRIKGEMNQVRDVMIENIDNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLL 193          
The following BLAST results are available for this feature:
BLAST of DY258825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VA727_ARATH6.177e-10881.09Vesicle-associated membrane protein 727 OS=Arabido... [more]
VA725_ARATH1.100e-7252.45Vesicle-associated membrane protein 725 OS=Arabido... [more]
VA722_ARATH6.038e-7154.20Vesicle-associated membrane protein 722 OS=Arabido... [more]
VA726_ARATH2.295e-7053.36Putative vesicle-associated membrane protein 726 O... [more]
VA721_ARATH1.487e-6953.78Vesicle-associated membrane protein 721 OS=Arabido... [more]
VA724_ARATH2.543e-6147.28Vesicle-associated membrane protein 724 OS=Arabido... [more]
VA723_ARATH4.348e-5344.12Vesicle-associated membrane protein 723 OS=Arabido... [more]
VA713_ARATH4.997e-3335.85Vesicle-associated membrane protein 713 OS=Arabido... [more]
VA711_ARATH6.527e-3334.91Vesicle-associated membrane protein 711 OS=Arabido... [more]
VA712_ARATH1.042e-3034.43Vesicle-associated membrane protein 712 OS=Arabido... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3CE10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258825 ID=DY258825; Name=DY258825; organism=Citrus clementina; type=EST; length=1036bp
GATTCTCTCTCTTTGTTCCTCGATTCGAAATTCATCCGGCGGCTTTCTTT
TCCGGAATTGAGAAATTGGAAAGAAATGAATCAGAAAGGGTTGATTTACA
GCTTTGTTTCGAAAGGCACTGTCGTTTTAGCCGAGCACACGTCGTATTCC
GGAAATTTCAGTACCATTGCCATTCAATGTTTACAGAAATTGCCTGCGAG
TAGTAGCAAGTACACGTATTCATGCGATGGCCACACTTTTAACTTCCTCC
TCGACTCTGGATTCGTATTTCTGGTTGTTGCTGATGAATCGGTTGGGAGA
AGTGTGCCGTTTGTTTTTCTCGAACGAGTCAAGGATGATTTTAAACAGCG
GTATGGGGCGAGTATTCAGAATGAGGAATCACACCCCCTTGCTGATGATG
ATGAGGATGATGATTTGTTTGAAGATCGATTTAGCATTGCCTATAATCTT
GACAGAGAATTTGGGCCAAGGCTTAAGGAGCACATGCAGTATTGTATGAG
CCACCCTGAGGAGATGAGCAAGCTTTCCAAATTAAAGGCTCAAATAACTG
AGGTCAAGGGGATTATGATGGACAATATTGAGAAGGTTTTGGATCGTGGG
GAGAGGATTGAGCTACTGGTGGATAAAACAGAGAACCTGCAATTCCAGGC
TGACAGCTTCCAGAGACAAGGGAGGCAGTTACGGCGAAGGATGTGGCTGC
AGAATCTGCAAATGAAGTTGATGGTGGGAGGAGCAGTTATTGCCTTTATC
ATCATAGTTTGGCTCGTTGCCTGCGGAGGATTTTAATGTTAATGGCGGGC
GAAGCAAAATGTTAGTACTGGTAGAATTTTCATTGTATAAAAGGAAGAAA
AAGGTTTCTGGTTCTGTATACAACAGTGTTGATGCCTAATGGAGAAACCG
CACTATCTGTTTTGACCTCCTCTTCCAAACTCCTGAACTACCTGAACGGA
ATGGGGTTTTGTTAATAATAATTCCTAAATGGGAAGGGGAATCCAACACC
TACCCTACCCTATAAAAACCAAGGGCTTTAATCCTT
back to top