DY258836

Overview
NameDY258836
Unique NameDY258836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1266
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1262 contig Ccv1_Contig1262:1..1266. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.851e-27
Identity = 73/133 (54.89%), Postives = 89/133 (66.92%), Query Frame = 3
Query:  105 LPS--PSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            LPS  P F+ ++    ++ +S++ S  QN L S  + + + L   GAG           S        +VYKSGSVGRSLDISRFSSY+ELREELG+MF IEG  EDPLRSGWQLVFVD+END+LLLGDDPWE
Sbjct:  650 LPSTVPRFASSSGDAEASPMSLTDSGFQNSLYSCMQDTTHEL-LHGAGQI--------NSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWE 773          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.189e-27
Identity = 77/145 (53.10%), Postives = 89/145 (61.38%), Query Frame = 3
Query:   63 QIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            Q+ +  LL     NL S + S  N    ST  S S      M G L + SG L N     P+   + F +           VYKSGSVGRSLDI+RFS+Y ELREELGQMFGI+G+ +DP RSGWQLVFVDRENDVLLLGDDPWE
Sbjct:  660 QVDSSSLLYNMVPNLTS-NVSDGNL---STIPSGSTYLQNAMYGCLDDSSGLLQNTGENDPAT--RTFVK-----------VYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWE 787          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 9.189e-27
Identity = 77/145 (53.10%), Postives = 89/145 (61.38%), Query Frame = 3
Query:   63 QIRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            Q+ +  LL     NL S + S  N    ST  S S      M G L + SG L N     P+   + F +           VYKSGSVGRSLDI+RFS+Y ELREELGQMFGI+G+ +DP RSGWQLVFVDRENDVLLLGDDPWE
Sbjct:  658 QVDSSSLLYNMVPNLTS-NVSDGNL---STIPSGSTYLQNAMYGCLDDSSGLLQNTGENDPAT--RTFVK-----------VYKSGSVGRSLDITRFSNYAELREELGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWE 785          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.733e-25
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 3
Query:  273 QSLGSKYEPS----QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPW 494
            ++LGS+   S    +VYKSGS GRSLDIS+FSSY+ELR EL +MFG+EG+ EDP+RSGWQLVFVDRENDVLLLGDDPW
Sbjct:  786 ENLGSENPQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVLLLGDDPW 863          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.600e-25
Identity = 71/144 (49.31%), Postives = 91/144 (63.19%), Query Frame = 3
Query:   66 IRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            I TD   +     +P   +S A   D +TE +++ S   N LG    G+ N LN     PS           G+ +   +VYKSGS+GRSLDISRFSSY ELR EL ++FG+EG+ EDP+RSGWQLVFVDREND+LL+GDDPW+
Sbjct:  711 IITDANRETDTMAIPLLRYSGA---DLTTENTLATS---NCLGE--SGTFNPLNNISVNPSQ----------GATFV--KVYKSGSLGRSLDISRFSSYCELRSELERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQ 834          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.502e-24
Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 3
Query:  303 QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            +VYKSG+VGR LDI+RFSSY+ELR E+G++FG+EG+ EDPLRSGWQLVFVDRE+DVLL+GDDPW+
Sbjct:  781 KVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQ 845          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 2.502e-24
Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 3
Query:  303 QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            +VYKSG+VGR LDI+RFSSY+ELR E+G++FG+EG+ EDPLRSGWQLVFVDRE+DVLL+GDDPW+
Sbjct:  781 KVYKSGTVGRLLDITRFSSYHELRSEVGRLFGLEGQLEDPLRSGWQLVFVDREDDVLLVGDDPWQ 845          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24
Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 3
Query:  303 QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            +VYKSG+ GRSLDI+RFSSY+ELR ELG++FG+EG+ E+PLRSGWQLVFVDRE+DVLL+GDDPW+
Sbjct:  790 KVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQ 854          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 3.268e-24
Identity = 50/65 (76.92%), Postives = 62/65 (95.38%), Query Frame = 3
Query:  303 QVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            +VYKSG+ GRSLDI+RFSSY+ELR ELG++FG+EG+ E+PLRSGWQLVFVDRE+DVLL+GDDPW+
Sbjct:  790 KVYKSGTYGRSLDITRFSSYHELRRELGRLFGLEGQLENPLRSGWQLVFVDREDDVLLVGDDPWQ 854          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFS_ARATH (Auxin response factor 19 OS=Arabidopsis thaliana GN=ARF19 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 3.739e-20
Identity = 42/66 (63.64%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  300 SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            ++V K GSVGRS+D++R+S Y+ELR +L +MFGIEG+ EDPL S W+LV+ D END+LL+GDDPWE
Sbjct:  961 TKVQKRGSVGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWE 1026          
The following BLAST results are available for this feature:
BLAST of DY258836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ARFH_ARATH1.851e-2754.89Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
ARFL_ORYSJ9.189e-2753.10Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI9.189e-2753.10Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFF_ARATH1.733e-2573.08Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFY_ORYSJ8.600e-2549.31Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFF_ORYSJ2.502e-2476.92Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI2.502e-2476.92Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFQ_ORYSJ3.268e-2476.92Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI3.268e-2476.92Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFS_ARATH3.739e-2063.64Auxin response factor 19 OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258836 ID=DY258836; Name=DY258836; organism=Citrus clementina; type=EST; length=1266bp
AGGCAGAGGATCGGGCACAACAACAGCAACAGCCACAACAACACATGTAT
CATGATGCACTTCAGATTCGAACTGATGAGCTTCTGCAGAGGCAGCAGTC
AAATCTGCCTTCACCATCATTTTCTAAAGCAAACTTCATGGACTCAAGCA
CGGAAATCTCAGTTTCTATCAGTCCTATGCAGAACATGCTGGGTTCCTTG
CCTGAAGGGAGTGGCAATCTTTTGAACTTCTCAGGAGCTGGTCCATCTAT
GCTGAGGCAGCAGTTTCCCCAACAATCGTTGGGTTCTAAGTATGAACCTT
CACAGGTCTATAAATCGGGTTCGGTTGGGCGCTCACTAGACATCTCCCGG
TTCAGCAGCTATAATGAGCTGCGGGAAGAGCTGGGTCAGATGTTTGGAAT
TGAGGGGAAGTTTGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCG
TCGACAGGGAGAATGACGTGCTTCTCCTTGGAGACGACCCATGGGAGTAA
GTGACCGTCATGATTTTCCAGATTTTTTATTCAACTTAACTTGTGTGTTA
AGATTTGTCTCCTACTGCTTGTTTTATGCTTGGTATACATCTGGTCAGGA
TTGCTAGCATCACTTCCTTTTATATGTAGATTTCGAAGTTCCAGACCATC
AGATGAAAGCCCTTTGAGTTACTGAGATTGCATTTAACACGTGTCTTTAT
TAAGGTGCATCAATTATACCTGTCAAATACAATCTGTCAGTAAATTGCTA
AATTTTGAAAAATATATAATCTGTCATTTAAATTGCTTTATTTTCAAAAA
CTGTCAACTACAACCTGGCAGTTAAATTTGCTTATTTTTGAAACCCAATG
ACCTAATATTTGTGAAATTGTGACAATTTTTTAAACCATAAATTCATGAA
TATTGAAAATCCCCTCGGGGGGTGCCTTTTAATTGAATTTACCCCGGCAT
TCCAGTTCCCTTTTGCAAAGGCAATCCTTAAAAAGGGGAAATCATTTGCT
TCTTATAATTTTTTGGTTGGTTCTTTGGGTTTCTTTTTTCCAAATTTTGT
TCTTCCCAAAACCCGGGTTAAAAACAAAAAAAAACAATTTGGGTGTGTAA
GAGAAATGACATTTTGCCCCAATTTTTATCTCCCCTTTTCCCCCTAAGGA
GACACCCCCCATAACACAGGAAAACCCTTTTTTGGGGGCGGGGCCTTTTT
TTGTTGAGAAAATAAAGGTTTTGTTGGGCGTCAATATACCACACAAAAAA
AATACTCTTTCTCCCC
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