DY258847

Overview
NameDY258847
Unique NameDY258847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1230
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10177 contig Ccv1_Contig10177:2..1231. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258847 vs. ExPASy Swiss-Prot
Match: YGI3_SCHPO (Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe GN=SPBC2A9.03 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.867e-17
Identity = 71/262 (27.10%), Postives = 119/262 (45.42%), Query Frame = 3
Query:   39 HFQLRNLLWATSKHDVYLMQNYSLMHWSSLLRRGKEVLNVAKPIVPTIKRPGLSAQSLNRVQISTMAVKDNLMVAGGFHGELICKYLDQPGVAFCTNLTTDDNAITNTVDVFRSPNGSKRVIAANNDAKVRIFDAENFSCLNRFSYDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTLDRRFLGMAEPADFGHVFDTE 824
            H  L   +    +H V  + N S+   ++L     +++++   I             L +  IS +   + +   G  +G+  C +  + G +F T   +DD+   N + +F      K+ I   ND  V + D +  S +  +    +VN   +  +  L  V  DS + ++ D +S  V+  L  H D     +WHP+G ILA+G QDTT ++WDIR L +S   L   M A+  L F+     L + E ADF  +FDT+
Sbjct:  134 HHHLCKSVKVVGEHSVIYVSNNSIRMENTLHDNSVQIIDLKNNI-------------LQKKAISCLDTTNAVGCLGTLYGQY-CIFNFKNG-SFSTRKLSDDSI--NHIQLF----SEKKFILGCNDGAVYVEDVQRTSPILVYRCSNAVNCVQLFDETPLALVCTDSKDAMLIDIRSNSVSAKLP-HSDSVLTGSWHPNGNILATGGQDTTAKVWDIRALGKSFRNLGSQMSAVTNLCFSPLGESLAVTEQADFVQLFDTK 373          
BLAST of DY258847 vs. ExPASy Swiss-Prot
Match: HETE1_PODAN (Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.070e-11
Identity = 44/147 (29.93%), Postives = 80/147 (54.42%), Query Frame = 3
Query:  393 KRVIAANNDAKVRIFDAENFSCLNRFS-YDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTLDRRFLGMAEPADFGHVFDTESG 830
            +RV + ++D  ++I+DA + +C      +   V + + SPDG+ +A   D     I DA SG  T  L+GH     + A+ PDG+ +ASG+ D T ++WD  + + + T L+G+ G++ ++ F+ D + +          ++DT SG
Sbjct:  896 ERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDDHTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCTQT-LEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG 1041          

HSP 2 Score: 68.9366 bits (167), Expect = 6.839e-11
Identity = 46/152 (30.26%), Postives = 85/152 (55.92%), Query Frame = 3
Query:  378 SPNGSKRVIAANNDAKVRIFDAENFSCLNRFS-YDWSVNNTSVSPDGKLLAVLGDSTECLIADAQSGKVTGNLKGHLDYSFASAWHPDGRILASGNQDTTCRLWDIRNLSQSLTVLKGNMGAIRALKFTLDRRFLGMAEPADFGHVFDTESG 830
            SP+G +RV + + D  ++I+DA + +C      +   V++ + SPDG+ +A         I DA SG  T  L+GH  +  + A+ PDG+ +ASG+ D T ++WD  + + + T L+G+ G ++++ F+ D + +      +   ++DT SG
Sbjct: 1102 SPDG-QRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQT-LEGHGGWVQSVAFSPDGQRVASGSSDNTIKIWDTASG 1251          
The following BLAST results are available for this feature:
BLAST of DY258847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YGI3_SCHPO2.867e-1727.10Uncharacterized WD repeat-containing protein C2A9.... [more]
HETE1_PODAN3.070e-1129.93Vegetative incompatibility protein HET-E-1 OS=Podo... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3CH10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258847 ID=DY258847; Name=DY258847; organism=Citrus clementina; type=EST; length=1230bp
TTCAGTTTAACATAAGGCTTGTCAAATCGACAATTGTGCATTTTCAGTTA
AGGAATTTGTTATGGGCAACATCAAAGCATGATGTGTATCTGATGCAGAA
TTATTCTCTAATGCATTGGTCTTCATTGCTCCGTAGAGGCAAAGAAGTGC
TCAACGTGGCAAAGCCAATTGTTCCCACCATAAAACGCCCTGGTTTGTCA
GCTCAGTCTCTGAATAGAGTGCAAATAAGCACTATGGCAGTTAAAGATAA
TCTGATGGTGGCTGGTGGTTTTCATGGGGAGCTTATCTGCAAGTACTTAG
ATCAACCTGGGGTTGCTTTCTGCACAAATTTAACAACAGATGATAATGCC
ATCACCAATACAGTGGATGTGTTCCGGAGCCCTAATGGCTCGAAGAGGGT
CATAGCAGCAAACAATGATGCCAAAGTTAGAATATTTGACGCTGAAAATT
TCAGTTGCCTTAATCGCTTCTCATATGATTGGTCTGTGAATAATACCTCT
GTTAGTCCAGATGGGAAGTTGCTTGCAGTACTTGGGGACAGCACAGAGTG
CTTGATAGCTGATGCTCAGTCTGGTAAAGTCACTGGGAACCTTAAAGGAC
ACTTGGACTACTCATTTGCTTCAGCCTGGCACCCGGATGGAAGAATTTTA
GCCTCTGGGAACCAAGACACTACTTGCAGGCTGTGGGACATAAGGAACTT
ATCGCAATCCCTGACTGTGTTGAAGGGAAATATGGGGGCCATTAGGGCTC
TCAAGTTCACCCTCGACCGCCGGTTTCTGGGCATGGCTGAGCCAGCAGAC
TTTGGTCATGTATTTGATACAGAATCTGGATTTGTCAAGTGCCAGGAGAA
TGATCCTATTTGGGGAAGATGCCCGGAATATCCTTAACCCCGAAACCAAA
ACCTCTATTTTGTGGTGGTCGCCTAACCCCCCGTACCGAAACTTTATTGG
AATTCCACAGGAAGCCATTTCAACCCAATATTTGGGACCTCCTATTTCCA
AATAAGAAGAACCCCTAAAAACCCTGGGAAAAAATTGTATTTGGCCAAAA
AAAATTTTTTTTTTTTTTTAAAAAGGGGGTGGGAAGGGTTTTTTAATAAA
TTTTTGGGGGGTTTTTTCCCCTTTTATTTTCCCCCCCCCAAAGGGTGAAA
TAAAAAAAAAAAAAACCGGGGGGGGCGCCAAAATTTTAACACAACACAAA
AAAGGGCTCTTTTGGTGGGCTTTTTTTTTT
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