DY258852

Overview
NameDY258852
Unique NameDY258852
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1252
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1266 contig Ccv1_Contig1266:1..1252. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY258852 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 6.724e-22
Identity = 61/135 (45.19%), Postives = 76/135 (56.30%), Query Frame = 1 
Query:  502 AELPVPIVLVGVGDGPWDMMKEFDDNIPARASDNFQYANFPETHAKKHDQTPKENKFALSALTDIPSPYKSN-------------HKSLTYPRPPKGKGPNTGSPPPPLYTEQPPSFHTLNPINSTHFKAHSPFP 867
            ++LP+ IVLVGVGDGPWDMM+EFDDNIPARA DNFQ+ NF E  AK   Q+ KE +FALSAL +IP  YK+               +    P P +G   +  SP P       PS    +P    H ++ SP P
Sbjct:  281 SKLPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAKNKAQSLKETEFALSALMEIPQQYKATIELNLLGRRNGYIPERFPLPPPMRGGSSSYNSPKPSRLPSFKPSVPP-HPTEGYHVRS-SPVP 413
[Close]
BLAST of DY258852 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.782e-22
Identity = 55/98 (56.12%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:  496 KQAELPVPIVLVGVGDGPWDMMKEFDDNIPARASDNFQYANFPETHAKKHDQTPKENKFALSALTDIPSPYKSNHKSLTYPRPPKGKGPNTGSPPPPL 789
            K + LP+ IVLVGVGDGPWDMM+EFDDNIPARA DNFQ+ NF E  +K  DQ+ KE +FALSAL +IP  YK+  + L       G  P     PPP+
Sbjct:  313 KASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSKNKDQSRKETEFALSALMEIPPQYKATIE-LNLLGVRNGNIPQRIPLPPPV 409
[Close]
BLAST of DY258852 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.397e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:  511 PVPIVLVGVGDGPWDMMKEFDDNIPARASDNFQYANFPETHAKKHDQTPKENKFALSALTDIPSPYKS 714
            P+ I++VGVGDGPW+MM  FDDNIP R  DNF + +F   H    +    +  FAL+AL +IP  YK+
Sbjct: 7471 PLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDF---HKVMFNAPNADASFALNALMEIPDQYKA 7535
The following BLAST results are available for this feature:
BLAST of DY258852 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RGLG2_ARATH6.724e-2245.19E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH8.782e-2256.12E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL2.397e-1148.53Copine domain-containing protein 2 OS=Caenorhabdit... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DA05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258852 ID=DY258852; Name=DY258852; organism=Citrus clementina; type=EST; length=1252bp
AAGTTGCACGCCTTTGATCCTACTGAGATGGGTCTTGATGTCATGAGAAG
CCGTTCGAATTAAATTTTATACTTGCCTATGGTGCACTGGAAAGCCCATA
CTATATTGTTCACTTAAATGAAATGTCTATATCTTTTATGACTTAGAACT
TGCTTTGCTACCGGCTTGTGGTCAGAGTTAAAGACATTTGAAATTAGTCT
TCCCATATGTTATATCTGGGGAACAAAAGCGGGAGTAACCCCGCATGGAG
AGACGACAATTACAGAAAAAATACATGGCGCTTGTGATGACGCAGGAGTG
CCACAAGTAATTGCTTATAAAGAGTGGCACTAGCTCTCTCCAGAATGACA
GCGAGGTAGATCTTGATGCAGTGATATGTTGGCTCCCATGGTCATCATAC
CCACATGGATTATGGCCGCCGGAAACTAGAACAGTTGACACAGTGCGTGG
TTGCTCAAGTCCTCTCGAGCATAAGATCAGTTGATGCAAATGTAAAAGCA
AGCCGAGCTCCCCGTGCCAATTGTGCTAGTCGGGGTAGGAGATGGGCCCT
GGGACATGATGAAAGAATTTGATGATAACATTCCTGCACGAGCATCTGAT
AACTTTCAGTATGCGAATTTTCCAGAAACCCATGCAAAAAAACATGATCA
AACTCCAAAGGAGAACAAATTTGCCCTTTCCGCTCTAACGGACATCCCCT
CCCCATATAAAAGCAACCATAAAAGCTTAACCTACCCGCGTCCCCCGAAA
GGAAAAGGTCCCAACACAGGCTCCCCCCCCCCCCCCCTGTATACCGAGCA
ACCACCATCTTTCCACACCCTAAACCCAATCAATTCCACCCATTTTAAAG
CGCACAGCCCCTTTCCCATAAATAAAAGCCTCCCCGGCAACCCTCGCCTC
CCCCCGCTCCGACTTTCACGAAAAGAAAAACCACCCTTGCCATCCTTTGC
CCCTATTAAAGTCGAACCAAACCCGCCTTTTGGTTCTCGACAATCCAACC
TAGTTCCGCAAAGTTTGCCCCAACAACCCTTAAAAATAACCCCCCCCACT
TCGCCAAACACAACTCTTCGAAACCCCCACATATAACGCCTCTAATCCAA
TTTCCTCATTAACTCAAAAAAAAAATCAACCCAATTCACCTCCTCTTCAC
CTTTTTCCTTTCACAAAAAAACACCACTCAACCACACCAACAATTCGCCG
CTAACACAACATCCCCCCCCCCCCTGCCCTACACCACAACTCCATCACCT
CC
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