DY258853

Overview
NameDY258853
Unique NameDY258853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1256
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258853_ssr48 microsatellite DY258853_ssr48:48..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY258853 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 6.715e-38
Identity = 80/229 (34.93%), Postives = 129/229 (56.33%), Query Frame = 2
Query:  173 ITLLVVGVLIACCLTHVRSDSSDHRFKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVIEISARMDPHSLVDLTEDKEVDVEFMYSVKWEGTDPPFERGRRNTPSLLLAPSLGNSWFSIKN 859
            I L+ +  +I   +  V S S+ H FK  D VP Y N VGP+ NP+ETY ++ LPFC P +I   K+  LGE+L GD  V + Y+  F+   ++   C   L ++D+ +F+ A+ + +Y +M YDDLPI+ F+G VD    T+    +Y+LY HI F+  YN D+VI ++   +   +++L++  E+ ++  YS KW+ T+  F + R +         L   W S+ N
Sbjct:    5 ILLIYLICIIVSSIVLVES-SNKHHFKENDEVPFYVNNVGPYSNPTETYEFYTLPFCKPSSI-SYKKTKLGEILQGDSAVLSDYQFPFKSSFENKQLCEYTLKKEDIEKFKKAIGEYYYAEMIYDDLPIFSFVGTVDDSDLTN---IRYYLYNHIPFEFDYNGDQVIRVNIDTEHIKVIELSDQDEITLKLTYSAKWQPTEHEFSK-RMDLYEEFFTKELEIHWLSVMN 227          
BLAST of DY258853 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.271e-37
Identity = 88/234 (37.61%), Postives = 130/234 (55.56%), Query Frame = 2
Query:  170 PITLLVVGVLIACCLTHVRSDSSDHRFKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEDKEVDVEFMYSVKWEGTDPPFERGRRNTPSLLLAP-SLGNSWFSIKN 859
            P+ +L++G+       H         +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL  L  D+ + +   YSV+W  T       RR        P +L   W SI N
Sbjct:   16 PVLILLLGI------GHGPRVEGVTHYKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSETSVEHRSDRRRADDGGFFPRTLEIHWLSIIN 241          

HSP 2 Score: 23.0978 bits (48), Expect = 1.271e-37
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  873 FPFIGFLGPILMAILEND 926
            F  +GF+  ILM +L ND
Sbjct:  247 FLLVGFVAVILMRVLRND 264          
BLAST of DY258853 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.809e-37
Identity = 84/208 (40.38%), Postives = 121/208 (58.17%), Query Frame = 2
Query:  248 FKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEDKEVDVEFMYSVKWEGTDPPFERGRRNTPSLLLAP-SLGNSWFSIKN 859
            +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL  L  D+ + +   YSV+W  T       RR        P +L   W SI N
Sbjct:   36 YKPGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRSDELLGLTHTYSVRWSETSVEHRSDRRRGDDGGFFPRTLEIHWLSIIN 241          

HSP 2 Score: 23.0978 bits (48), Expect = 2.809e-37
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  873 FPFIGFLGPILMAILEND 926
            F  +GF+  ILM +L ND
Sbjct:  247 FLLVGFVAVILMRVLRND 264          
BLAST of DY258853 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.660e-37
Identity = 84/208 (40.38%), Postives = 121/208 (58.17%), Query Frame = 2
Query:  248 FKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEDKEVDVEFMYSVKWEGTDPPFERGRRNTPSLLLAP-SLGNSWFSIKN 859
            +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + +  DR+I   +S R + PHSL  L  D+ + +   YSV+W  T       RR+       P +L   W SI N
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFRGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHAYSVRWSETSVERRSDRRHGDDGGFFPRTLEIHWLSIIN 241          

HSP 2 Score: 23.0978 bits (48), Expect = 3.660e-37
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  873 FPFIGFLGPILMAILEND 926
            F  +GF+  ILM +L ND
Sbjct:  247 FLLVGFVAVILMRVLRND 264          
BLAST of DY258853 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.660e-37
Identity = 84/208 (40.38%), Postives = 121/208 (58.17%), Query Frame = 2
Query:  248 FKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEDKEVDVEFMYSVKWEGTDPPFERGRRNTPSLLLAP-SLGNSWFSIKN 859
            +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL  L  D+ + +   YSV+W  T       RR        P +L   W SI N
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHTYSVRWSETSVERRSDRRRGDDGGFFPRTLEIHWLSIIN 241          

HSP 2 Score: 23.0978 bits (48), Expect = 3.660e-37
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  873 FPFIGFLGPILMAILEND 926
            F  +GF+  ILM +L ND
Sbjct:  247 FLLVGFVAVILMRVLRND 264          
BLAST of DY258853 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.767e-37
Identity = 84/208 (40.38%), Postives = 121/208 (58.17%), Query Frame = 2
Query:  248 FKVGDPVPLYANKVGPFHNPSETYRYFDLPFCSPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVI--EISAR-MDPHSLVDLTEDKEVDVEFMYSVKWEGTDPPFERGRRNTPSLLLAP-SLGNSWFSIKN 859
            +K GDPV LY NKVGP+HNP ETY Y+ LP C P+ I + K  +LGEVL+GDR+  + Y++ FR+  +  + C  +LS   V Q R A+E+ +YF+   DDLPI GF+G +++ G   P  +K  L+ H+ F + ++ DR+I   +S R + PHSL  L  D+ + +   YSV+W  T       RR        P +L   W SI N
Sbjct:   36 YKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPEKI-RHKSLSLGEVLDGDRMAESLYEIRFRENVEKRVLCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRGFVGYMEESGFL-PHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHTYSVRWSETSVERRSDRRRGDDGGFFPRTLEIHWLSIIN 241          

HSP 2 Score: 23.0978 bits (48), Expect = 4.767e-37
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 3
Query:  873 FPFIGFLGPILMAILEND 926
            F  +GF+  ILM +L ND
Sbjct:  247 FLLVGFVAVILMRVLRND 264          
BLAST of DY258853 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.127e-27
Identity = 73/225 (32.44%), Postives = 117/225 (52.00%), Query Frame = 2
Query:  197 LIACCLTHVRSDSSDHRFKVGDPVPLYANKVGPFHNPSETYRYFDLPFC-SPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVIEISARMDPHSLVDLTEDKEVDVEFMYSVKWEGTDPPFERGRRNTPSLLLAPSLGN---SWFSIKN 859
            L+   L   R+D  +H ++  + V L+ N VGP+HN  ETY+YF LPFC      I    E LGE L G  L  +   + F+D+   A  C   L ++    F  A++  +++QMY DDLPIWG +G+ D+ G+       Y+L+ + + +I +N +R+++++  +     V L  + +  ++  YSVKW+ +D  FE    +     L PS       WFSI N
Sbjct:   18 LLLLLLPRTRADEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGE------DYYLWTYKKLEIGFNGNRIVDVN--LTSEGKVKLVPNTK--IQMSYSVKWKKSDVKFE----DRFDKYLDPSFFQHRIHWFSIFN 228          
BLAST of DY258853 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.084e-27
Identity = 73/225 (32.44%), Postives = 116/225 (51.56%), Query Frame = 2
Query:  197 LIACCLTHVRSDSSDHRFKVGDPVPLYANKVGPFHNPSETYRYFDLPFC-SPDAIIKEKREALGEVLNGDRLVSAPYKLNFRDEKDSALACRKKLSEQDVAQFRSAVEKDFYFQMYYDDLPIWGFIGKVDKEGKTHPSEYKYFLYKHIQFDILYNKDRVIEISARMDPHSLVDLTEDKEVDVEFMYSVKWEGTDPPFERGRRNTPSLLLAPSLGN---SWFSIKN 859
            L+   L   RSD  +H ++  + V L+ N VGP+HN  ETY+YF LPFC      I    E LGE L G  L  +   + F+D+      C   L ++    F  A++  +++QMY DDLPIWG +G+ D+ G+       Y+L+ + + +I +N +R+++++  +     V L  + +  ++  YSVKW+ +D  FE    +     L PS       WFSI N
Sbjct:   16 LLLLLLPRARSDEHEHTYQDKEEVVLWMNTVGPYHNRQETYKYFSLPFCVGSKKSISHYHETLGEALQGVELEFSGLDIKFKDDVMPGTYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIVGEADENGE------DYYLWTYKKLEIGFNGNRIVDVN--LTSEGKVKLVPNTK--IQMSYSVKWKKSDVKFE----DRFDKYLDPSFFQHRIHWFSIFN 226          
The following BLAST results are available for this feature:
BLAST of DY258853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PHG1B_DICDI6.715e-3834.93Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S1_RAT1.271e-3737.61Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]
TM9S1_MOUSE2.809e-3740.38Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_PONAB3.660e-3740.38Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_HUMAN3.660e-3740.38Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN4.767e-3740.38Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TM9S3_HUMAN3.127e-2732.44Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
TM9S3_MOUSE4.084e-2732.44Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DA07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258853 ID=DY258853; Name=DY258853; organism=Citrus clementina; type=EST; length=1256bp
AAAGAAGAAAAAAAAATTACTCAGATCTCCGGGGCCTCGCTTAATAGATA
TATATATAACCTGCACGACCTCCAGCTCCCTCTAAGAGGCCTGTGTCTGG
TTCATTGTCACTTGAAACTTGCACTTGTCTTCACGTTCTCAGAAAATTAG
TCAAACAATGAGCGATTCCCCTATCACACTTCTTGTTGTTGGGGTTCTGA
TCGCCTGTTGCTTGACCCATGTGAGATCTGATTCTTCCGATCACCGCTTC
AAGGTCGGTGACCCTGTCCCTCTATACGCCAATAAGGTTGGCCCTTTCCA
CAACCCCAGTGAAACTTATCGATATTTTGATCTACCATTCTGCTCCCCAG
ATGCAATAATAAAAGAGAAAAGGGAAGCACTTGGTGAGGTGTTGAATGGG
GACCGACTTGTTAGTGCTCCTTATAAACTCAACTTCAGAGACGAGAAGGA
CTCTGCTCTTGCGTGTAGAAAGAAGTTGTCCGAGCAAGATGTTGCTCAGT
TCCGAAGTGCAGTGGAAAAAGACTTCTATTTCCAAATGTACTATGATGAC
TTACCCATCTGGGGGTTCATTGGTAAAGTTGACAAGGAAGGAAAGACTCA
TCCGAGCGAGTATAAGTATTTCCTTTACAAGCATATCCAGTTTGACATTC
TTTATAACAAAGACCGTGTTATTGAGATCAGTGCTCGAATGGATCCTCAT
TCTTTGGTGGACTTGACAGAAGATAAGGAAGTTGATGTGGAGTTCATGTA
CAGTGTGAAATGGGAAGGAACTGACCCCCCTTTTGAAAGAGGAAGGAGAA
ATACTCCCTCTCTTCTCCTTGCCCCATCTTTGGGAAATTCTTGGTTTTCA
ATAAAAAATCTTGGGGGAAGGTTTTCCTTTTATTGGTTTTCTTGGCCCCA
TTCTCATGGCAATTCTAGAAAATGATTTTTGGAAAAATTCCCCAAAAAGA
GGAAACTGCTAAAAACACCAAAAAAAAAAAGGAGGGAAACAACCCCCGGG
GGAATGGTTTCCCGTTCCCCCAAAAAAAAATTTTTTTTGTGGGCCCCCCT
TTGGTTTTGGGCCCGCCCCGTTTTTTTCTTTTCCTGTTTTTTTTATTTTT
TTTTTCTTTGCCCCCTGGGGGGGGGGGATTTTTTTTATCCCCCCCAAACC
CCAAAAAAGAAGTTTTTTTATTTAGTCCGGGCGGGGGGGGGGGGGGGGGC
AAATAATAATCCCCCTCCTCCCTCCTTTTTTGGGGGGGGTGAAGGAGGGG
GGGGGG
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