DY258860

Overview
NameDY258860
Unique NameDY258860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length941
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1269 contig Ccv1_Contig1269:1..941. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 387.882 bits (995), Expect = 4.534e-107
Identity = 197/230 (85.65%), Postives = 211/230 (91.74%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 690
            RGDSVVLMGKNTMMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDL            GAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+ VSMVT+L+LAISYPTLAAAPHMFVNAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF
Sbjct:   49 RGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKF 278          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 384.415 bits (986), Expect = 5.013e-106
Identity = 192/230 (83.48%), Postives = 211/230 (91.74%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 690
            RGDSVVLMGKNTMMKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:   48 RGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 5.543e-105
Identity = 191/230 (83.04%), Postives = 213/230 (92.61%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 690
            RGDSVVLMGKNTMMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF
Sbjct:   49 RGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 9.454e-105
Identity = 189/230 (82.17%), Postives = 211/230 (91.74%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 690
            RGDSVVLMGKNTMMKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:   48 RGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 362.459 bits (929), Expect = 2.040e-99
Identity = 178/230 (77.39%), Postives = 205/230 (89.13%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 690
            RGDS+VLMGKNT+++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFAS VSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF
Sbjct:   49 RGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKF 278          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 354.755 bits (909), Expect = 4.254e-97
Identity = 178/230 (77.39%), Postives = 202/230 (87.83%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 690
            RGDSVVLMGKNT+++R I+++AEKTGN  F  L+ LL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+ VSMV +L+LAISYPTLAA PHMF+N YKNV+AVA+ T+YS+P ADK+KEYL DPSKF
Sbjct:   49 RGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF 278          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 350.903 bits (899), Expect = 6.142e-96
Identity = 182/230 (79.13%), Postives = 197/230 (85.65%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 690
            RGDSVVLMGKNTMMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG L            GAPA VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA  VS       +   P  +AAPH+F+NAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF
Sbjct:   49 RGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKF 278          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 293.123 bits (749), Expect = 1.520e-78
Identity = 151/194 (77.84%), Postives = 167/194 (86.08%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 582
            RGDS+VLMGKNTMMKR+IR+HAE TGN    N+  L   NVGLIFTKGDL            GAPAR GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+ VSMVT+L+LAISYPTLAAAPH
Sbjct:   49 RGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAAPH 242          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 2.059e-67
Identity = 128/230 (55.65%), Postives = 163/230 (70.87%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 690
            RG ++VLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LIR GDKVG+SEA LL  L I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++ L I YPTLA+ PH  +N YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:   48 RGKAIVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
BLAST of DY258860 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.743e-66
Identity = 127/230 (55.22%), Postives = 163/230 (70.87%), Query Frame = 1
Query:    1 RGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 690
            RG +VVLMGKNTMM++ IR H E   N+A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q VY+NGS+YSPEVLD++ED L  +F   V  + ++ L I YPT+A+ PH  VN YK V+A+A+ T+YSFP ADKVK +LADPS F
Sbjct:   48 RGKAVVLMGKNTMMRKAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275          
The following BLAST results are available for this feature:
BLAST of DY258860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RLA0_SOYBN4.534e-10785.6560S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA02_ARATH5.013e-10683.4860S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA01_ARATH5.543e-10583.0460S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA03_ARATH9.454e-10582.1760S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_ORYSJ2.040e-9977.3960S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE4.254e-9777.3960S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU6.142e-9679.1360S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_CHERU1.520e-7877.8460S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_ICTPU2.059e-6755.6560S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_RANSY1.743e-6655.2260S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DB10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258860 ID=DY258860; Name=DY258860; organism=Citrus clementina; type=EST; length=941bp
CGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATGATGAAGAGGAC
TATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTCAATCTCA
TCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGGTGATTTG
AAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTCCTGCTCG
TGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGCAACACAG
GTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACATTCCCACC
AAGATTAACAAGGGTACTGTTGAAATTATCACACCTGTGGAGCTTATTAG
GAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTGCTTGCAAAGCTTG
GGATTAGACCCTTCTCTTATGGTCTTGTTGTCCAGTCTGTCTATGAAAAC
GGTTCCGTCTACAGCCCAGAGGTCCTTGACCTGTCTGAAGATGACCTAGT
GGAGAAGTTCGCCTCAAGTGTATCAATGGTCACCGCTCTGGCACTTGCCA
TCTCATACCCGACCCTGGCAGCTGCTCCACACATGTTCGTCAATGCATAC
AAGAATGTGGTTGCTGTTGCTCTTGCAACTGAGTATTCATTCCCTCAGGC
CGACAAAGTGAAGGAGTACCTGGCGGACCCAAGCAAGTTTGCTGTTGCTG
CTGCCCCGGTTGCTGGCGGTGGTGATGCCCCAGCTGCTGCTGCAAAGGAG
GAAGAGAAGAAGGAAGAGCCTGCTGAGGAGTCTGATGAAGATATGGGCTT
CAGCTTGTTCGACTAAGTGCACTGTCATTTGTGCTATAACTTAGGATTTT
GACGTTTATGGGTATGTTTGCTTTATTTTCTTAATGCTTTTTGTAGACTC
AGTTTCCCTTTTTATTTTATAAAATCTTTTATTTAGGAACA
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