DY258861

Overview
NameDY258861
Unique NameDY258861
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1187
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258861_ssr318 microsatellite DY258861_ssr318:318..329. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1270 contig Ccv1_Contig1270:1..1187. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258861 vs. ExPASy Swiss-Prot
Match: BLH1_ARATH (BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana GN=BLH1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.146e-15
Identity = 89/291 (30.58%), Postives = 111/291 (38.14%), Query Frame = 3 
Query:  228 MATYFHGNPAEFQAPD--GLQTLVLMNPTTYVXXXXXXXXXFSDTNHXXXXXXXHN--------SLIFLNXXXXXXXXXXXXXXTQHFVGIPTTAHQD------DSISPLHGLLPRV----HXXXXXXXXXXXXARDTPRAKQGXXXXXXXHQ-------------HPAFGSQGGQTVSGEDIRXXXXXXXXXXXXXXXXXXMQSVLLNPKYLKAAHELLDEVVNGNNMGISNKSEFSXXXXXXXXXXXXXXXXXSHRGAAGKQWANPPGETGPGNLTRGEKGKKFTMKKR 1001
            MA YFHGNP E  A    GLQTL+LMNPTTYV          ++ N         N        S +FL+              +Q FVGIP + H+       D+IS LHG  PRV    +            A +TPRA+QG        Q             H  FGS       GEDIR                      L++ KYLKAA ELLDEVVN ++  ++ KS+                   S +G+ G     P GE+  G    G  G      KR
Sbjct:    1 MAAYFHGNPPEISAGSDGGLQTLILMNPTTYVQYTQQDNDSNNNNNSNNSNNNNTNTNTNNNNSSFVFLDSHAPQPNA------SQQFVGIPLSGHEAASITAADNISVLHGYPPRVQYSLYGSHQVDPTHQQAACETPRAQQGLSLTLSSQQQQQQQHHQQHQPIHVGFGSG-----HGEDIRVGSGSTGSGVTNGIAN------LVSSKYLKAAQELLDEVVNADSDDMNAKSQL----------------FSSKKGSCGND--KPVGESSAGAGGEGSGGGAEAAGKR 256
The following BLAST results are available for this feature:
BLAST of DY258861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BLH1_ARATH1.146e-1530.58BEL1-like homeodomain protein 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DC01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258861 ID=DY258861; Name=DY258861; organism=Citrus clementina; type=EST; length=1187bp
GTTTCACTCCCCTTTCTTTTCCTCTTCACCATCATCTTCTAGCCACATAG
AAGATGAATAAATATGAATAAATTATCCATCATCTGTCCATTTCCTTTCA
GGTTTTGCTTGATAAGATCGATCCATCGATGGGCTGATTGCTCAAATTAA
GACTCAAATCAGGCAATTATAAGTTCGTTTCGGTTTCGTTTTTCAAGAAC
TCAAGATCAAAATAATAAGGTAACAGGATGGCAACGTACTTTCATGGGAA
CCCAGCTGAGTTTCAAGCCCCAGATGGGCTTCAAACCCTCGTACTTATGA
ACCCTACAACTTACGTTCAACAACAACAACAGCAACACCAACAATTCTCC
GACACAAATCATCCTCCGGCGCCGGCGCCGGCTCACAACAGCCTCATTTT
CCTCAACTCCTCTGCCATCTCCCCTCACGCGCCGCCGCCACCTTCCCACA
CTCAACACTTCGTCGGCATCCCCACCACCGCTCATCAGGATGACTCCATC
TCCCCTCTGCATGGACTCCTGCCGCGCGTCCACTACAACCTGTACAACCC
CAATTACCCTAGTCCACCAGCGCGTGACACCCCACGCGCCAAGCAGGGAC
TGTCTTTGAGCCTCTCTTCCCACCAACACCCCGCCTTCGGCTCCCAGGGT
GGTCAAACGGTTTCCGGAGAGGATATTAGGGTTTCTGGCGGGTCTGCATC
GTCGGGTTCGGGTGTCACTAATGGGGTTTCCGGGATGCAAAGTGTGTTGT
TGAACCCTAAGTACTTGAAAGCTGCTCACGAGCTGCTTGATGAAGTTGTT
AATGGGAACAATATGGGGATTAGCAACAAGAGTGAATTTTCAAGGAAGGG
AAGGGGGAAAAACAATAACAATAACCAAAAAGGTGATCGGAAAAGTCATC
GGGGGGCAGCCGGAAAACAATGGGCCAATCCACCCGGGGAAACGGGGCCG
GGGAACTTAACACGGGGGGAAAAAGGGAAAAAATTCACAATGAAAAAAAG
AAAACCTTAATTAATATAGGCTGGGGGGGGGTGGGGAACAAGGGGACCCC
GCCCGCTCCCCTTCCCCCCCAAAGGGCGAAAATGGGGGAATTTTTTCATT
TTTGGAAACCACAGCCCGGGCGGGGGAAATGGGAGGGCTAGCGAAAAAAA
AAACAAAACCACCCCCCCCCCCCCTTGGGCCTTCCTC
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