DY258873

Overview
NameDY258873
Unique NameDY258873
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14971 contig Ccv1_Contig14971:186..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.504e-58
Identity = 116/218 (53.21%), Postives = 149/218 (68.35%), Query Frame = 1
Query:    1 SVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGV-TLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIVNPSLGMFQ 651
            S+V  +G   SSYVHCDVTNE  +  A+D  VA  GKLD+MFNNAG+ G    R+ +  K DFERVL+VN+ G FLG KHAARVM PAR GSI+                Y  +KHA++G T+NAA ELG+ GIRVNC+SP  +ATPLA + +G+ DE +E  M ++ANLKG   L+ +DIA AAL+LASD+ +YVSG NL +DGG ++VN S G F+
Sbjct:   56 SLVAELGPDASSYVHCDVTNEGDVAAAVDHAVARFGKLDVMFNNAGVSGPPCFRMSECTKEDFERVLAVNLVGPFLGTKHAARVMAPARRGSIISTASLSSSVSGAASHAYTTSKHALVGFTENAAGELGRHGIRVNCVSPAGVATPLARAAMGMDDEAIEAIMANSANLKGAGALKADDIAAAALFLASDDGRYVSGQNLRVDGGLSVVNSSFGFFR 273          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.861e-45
Identity = 103/223 (46.19%), Postives = 135/223 (60.54%), Query Frame = 1
Query:    1 SVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFV---GITDEDLEGFMNSA---ANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIVNPSLGMFQ 651
            S++       + ++H DV  E  I NA+D  V   G LDI+ NNAG+ GA    I +   ++FE    VNV G FL +KHAARVMIP + GSI+                Y  +KHAVLGLT++ A ELGQ GIRVNC+SPYA+AT LA + +     T++   GF N A   ANLKGV L  +D+A A L+LASD+++Y+SG NL IDGGFT  N S  +F+
Sbjct:   63 SLLRGESKETAFFIHGDVRVEDDISNAVDFAVKNFGTLDILINNAGLCGAPCPDIRNYSLSEFEMTFDVNVKGAFLSMKHAARVMIPEKKGSIVSLCSVGGVVGGVGPHSYVGSKHAVLGLTRSVAAELGQHGIRVNCVSPYAVATKLALAHLPEEERTEDAFVGFRNFAAANANLKGVELTVDDVANAVLFLASDDSRYISGDNLMIDGGFTCTNHSFKVFR 285          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: TS2_MAIZE (Sex determination protein tasselseed-2 OS=Zea mays GN=TS2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.948e-40
Identity = 97/234 (41.45%), Postives = 131/234 (55.98%), Query Frame = 1
Query:   34 SYVHCDVTNESHIKNAIDQTVATHG-KLDIMFNNAGIGGANKTR----IIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATS--------FVGITDEDL-----------------EGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIVNPSLGM 645
            S+V CDV+ E  ++ A+D  ++ HG +LD+  NNAG+ G  +TR    I+  + A+F+RVL VN  G  LG+KHAAR M P R+GSI+                Y  +KHA++GLTKNAA EL   G+RVNC+SP+ +ATP+  +             D DL                 E  +   A LKG TLR  DIA A L+LASDEA+Y+SGHNL +DGG T     +G+
Sbjct:  104 SFVRCDVSVEDDVRRAVDWALSRHGGRLDVYCNNAGVLG-RQTRAARSILSFDAAEFDRVLRVNALGAALGMKHAARAMAPRRAGSIVSVASVAAVLGGLGPHAYTASKHAIVGLTKNAACELRAHGVRVNCVSPFGVATPMLINAWRQGHDDATADADRDLDLDLDVTVPSDQEVEKMEEVVRGLATLKGPTLRPRDIAEAVLFLASDEARYISGHNLVVDGGVTTSRNLIGL 336          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.533e-23
Identity = 70/198 (35.35%), Postives = 108/198 (54.55%), Query Frame = 1
Query:   37 YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPL-ATSFVGITDEDLEGFMNSAANLKGVTL--RTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            +V  D+T+E+  ++A++  V T G LD++ NNAGI       I + E +D+ +VL VN+TG+FL  KHA + M+ A  G+I+                Y  +K  VL LTK+ AV+  +  IRVNC+ P  + TPL   SF+   +  LE      A +  +    + E+IA   L+LASD + Y++G  +  DGG+T
Sbjct:   56 FVQTDITDEAACQHAVESAVHTFGGLDVLINNAGI--EIVAPIHEMELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLASDLSSYMTGSAITADGGYT 251          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: LINC_PSEPA (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase OS=Pseudomonas paucimobilis GN=linC PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.616e-23
Identity = 76/210 (36.19%), Postives = 108/210 (51.43%), Query Frame = 1
Query:    1 SVVESIGTSNSSYVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIP-ARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFTIV 627
            +VV + G   ++Y  CD+  E  +K  + QT+A  G LD  FNNA I  A    + +     F + + +NVTG FL +K+    MI     GSI+                Y  AKHAV+GLT+ AA + G+ GIRVN L P A+ TP+    +   D  LE ++NS   + G      + A AA++L SD A +V+G  L  DGGFT +
Sbjct:   45 AVVATSG-GKAAYFRCDIAQEEDVKALVAQTLAAFGGLDGSFNNAAIPQAGLP-LAEVSLERFRQSMDINVTGTFLCMKYQILAMIERGTKGSIVNTASAAGVVGVPMHGEYVGAKHAVVGLTRVAAADYGKHGIRVNALVPGAVRTPMLQRAMD-NDAGLEPYLNSIHPI-GRFSEPHEQAQAAVWLLSDAASFVTGSCLAADGGFTAI 250          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 71/193 (36.79%), Postives = 96/193 (49.74%), Query Frame = 1
Query:   37 YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            YVH DVT  +    A+D  V   G L ++ NNAGI   N   I D    +++R+L VN+TGVFLGI+   + M  A  GSI+                Y   K AV GLTK+ A+ELG  GIRVN + P  + TP+       TD   E    +A    G      +++   +YLASDE+ Y +G    +DGG
Sbjct:   57 YVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGI--LNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPM-------TDWVPEDIFQTAL---GRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG 237          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 71/193 (36.79%), Postives = 96/193 (49.74%), Query Frame = 1
Query:   37 YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGG 615
            YVH DVT  +    A+D  V   G L ++ NNAGI   N   I D    +++R+L VN+TGVFLGI+   + M  A  GSI+                Y   K AV GLTK+ A+ELG  GIRVN + P  + TP+       TD   E    +A    G      +++   +YLASDE+ Y +G    +DGG
Sbjct:   57 YVHLDVTQPAQWTAAVDTAVTAFGGLHVLVNNAGI--LNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPM-------TDWVPEDIFQTAL---GRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGG 237          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.462e-23
Identity = 69/198 (34.85%), Postives = 107/198 (54.04%), Query Frame = 1
Query:   37 YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPL-ATSFVGITDEDLEGFMNSAANLKGVTL--RTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            +VH D+T+E   +NAI   V   G LD++ NNAGI       I + E +++ +VL+VN+TG+FL  KHA + M+ +  G+I+                Y  +K  VL LT++ AV+  +  IRVNC+ P  + TPL   SF+   +  LE      A +  +    + E+IA   L+LASD + Y++G  +  DGG+T
Sbjct:   56 FVHTDITDEPACQNAIRSAVDKFGGLDVLINNAGI--EIVAPIHEMELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLASDLSSYMTGSAITADGGYT 251          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: CPNA_COMTE (Cyclopentanol dehydrogenase OS=Comamonas testosteroni GN=cpnA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 66/195 (33.85%), Postives = 94/195 (48.21%), Query Frame = 1
Query:   37 YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            ++H DVTNE+H   A+D  +A   +LD + NNAGI      +   NE  +++R+  +NV  VFLG +     M  A  G I+                Y  +K AV   TK  AV+L  F IRVN + P  +ATP+      I D            L G   +  +++ A L+L SDEA +V G  L +DGG+T
Sbjct:   59 FLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLKPVQDTSNE--EWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQ---ILDAPQSARALLGPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYT 248          
BLAST of DY258873 vs. ExPASy Swiss-Prot
Match: CPNA_COMS9 (Cyclopentanol dehydrogenase OS=Comamonas sp. (strain NCIMB 9872) GN=cpnA PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.777e-22
Identity = 66/195 (33.85%), Postives = 94/195 (48.21%), Query Frame = 1
Query:   37 YVHCDVTNESHIKNAIDQTVATHGKLDIMFNNAGIGGANKTRIIDNEKADFERVLSVNVTGVFLGIKHAARVMIPARSGSILXXXXXXXXXXXXXXXXYCCAKHAVLGLTKNAAVELGQFGIRVNCLSPYALATPLATSFVGITDEDLEGFMNSAANLKGVTLRTEDIAYAALYLASDEAKYVSGHNLFIDGGFT 621
            ++H DVTNE+H   A+D  +A   +LD + NNAGI      +   NE  +++R+  +NV  VFLG +     M  A  G I+                Y  +K AV   TK  AV+L  F IRVN + P  +ATP+      I D            L G   +  +++ A L+L SDEA +V G  L +DGG+T
Sbjct:   59 FLHLDVTNENHWTGAVDTILAESDRLDALVNNAGILTLKPVQDTSNE--EWDRIFEINVRSVFLGTRAVIEPMRKAHKGCIVNVSSIYGLVGAPGAAAYEASKGAVRLFTKACAVDLAPFNIRVNSVHPGVIATPMTQQ---ILDAPQSARALLGPTLLGRAAQPMEVSQAVLFLVSDEASFVHGSELVVDGGYT 248          
The following BLAST results are available for this feature:
BLAST of DY258873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 140
Match NameE-valueIdentityDescription
MOMAS_ORYSJ2.504e-5853.21Momilactone A synthase OS=Oryza sativa subsp. japo... [more]
ABA2_ARATH1.861e-4546.19Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN... [more]
TS2_MAIZE8.948e-4041.45Sex determination protein tasselseed-2 OS=Zea mays... [more]
BACC_BACSU1.533e-2335.35Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
LINC_PSEPA2.616e-2336.192,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
HSD_MYCTU4.462e-2336.793-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO4.462e-2336.793-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
BACC2_BACSU4.462e-2334.85Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
CPNA_COMTE3.777e-2233.85Cyclopentanol dehydrogenase OS=Comamonas testoster... [more]
CPNA_COMS93.777e-2233.85Cyclopentanol dehydrogenase OS=Comamonas sp. (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DD06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258873 ID=DY258873; Name=DY258873; organism=Citrus clementina; type=EST; length=841bp
TCAGTTGTTGAATCCATAGGCACATCAAACTCATCCTATGTCCATTGCGA
TGTCACAAACGAATCCCACATTAAAAATGCAATCGACCAAACCGTTGCAA
CTCATGGCAAGCTGGACATAATGTTCAACAACGCCGGCATAGGCGGCGCT
AACAAGACCCGCATAATCGACAATGAAAAGGCCGATTTCGAGCGTGTCCT
GAGTGTAAATGTCACCGGAGTTTTCTTGGGCATCAAGCATGCTGCTCGTG
TCATGATTCCGGCTCGCAGTGGCAGCATTCTTTCAACTGCTAGCGTTAGC
TCAAGGGTTGGTGCTGCTGCCTCACATGCATACTGTTGTGCAAAACATGC
TGTTTTAGGACTCACCAAAAATGCTGCTGTTGAGCTAGGCCAATTTGGGA
TTAGGGTGAATTGCTTGTCACCTTATGCTCTTGCAACACCTTTGGCTACC
AGTTTTGTTGGGATTACCGATGAGGATCTGGAAGGTTTTATGAATTCAGC
GGCTAACCTTAAGGGTGTGACTTTAAGGACCGAAGATATTGCATATGCAG
CTCTTTATCTAGCGAGTGATGAGGCGAAGTATGTGAGTGGACACAATCTT
TTCATTGACGGAGGTTTCACTATTGTCAATCCCTCCCTCGGAATGTTTCA
GTACCCAGATTCTTGATCGAGTTAGTTAATTTCATCAAGGTTTTTTCCCA
TTTGAGTGGGGAAAAAAAAAACTCTGTTCAAATAATTTCATATTTGATCC
TTGATATCGAATGAAACAAAATTGAACAAGTTTTTTTTCATTCCTAGACT
CCTTAAAAAAGAAATTATTTCCAAAACGAAACCTTGAGTTT
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