DY258877

Overview
NameDY258877
Unique NameDY258877
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1142
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258877_ssr41 microsatellite DY258877_ssr41:41..52. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10186 contig Ccv1_Contig10186:26..1167. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258877 vs. ExPASy Swiss-Prot
Match: ILL3_ARATH (IAA-amino acid hydrolase ILR1-like 3 OS=Arabidopsis thaliana GN=ILL3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.641e-20
Identity = 35/62 (56.45%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  261 VALRKNKNTLCFQERVE*EHKKKFDGKMRACGYDVHSTVILGAAKMLPPRKDKLEGTAKNLF 446
            VALR + + L  QE VE +HK K DGKM ACG+D H+T++LGAAK+L  RK  L GT + LF
Sbjct:   97 VALRADMDALPLQELVEWDHKSKIDGKMHACGHDSHTTMLLGAAKLLSKRKRMLNGTVRLLF 158          

HSP 2 Score: 47.7506 bits (112), Expect = 5.641e-20
Identity = 35/117 (29.91%), Postives = 55/117 (47.01%), Query Frame = 1
Query:  436 KIFSPPADDGGASAFHMRKYGARGDCNTILGNVYRHTKTKEKYSICVLGPIWPLPGFLMKKQRGEVEPATMSHSKSDPKHTASAGIMSIETLNFKSSISPSKDPYGSRPLYHILFST 786
            ++   PA++GGA AFHM K GA GD   I G ++ HT         + GP          +  G+   ++ ++S  DP   AS+ I++++ +     IS   DP     L H+L  T
Sbjct:  155 RLLFQPAEEGGAGAFHMIKEGALGDSEAIFG-MHVHTGLPTGELATISGPALASTSIFSVRMSGKSPASSETYSCVDPVLAASSTILALQLI-----ISREVDPL----LSHVLSVT 261          
BLAST of DY258877 vs. ExPASy Swiss-Prot
Match: ILL5_ORYSJ (IAA-amino acid hydrolase ILR1-like 5 OS=Oryza sativa subsp. japonica GN=ILL5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.316e-16
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 3
Query:  261 VALRKNKNTLCFQERVE*EHKKKFDGKMRACGYDVHSTVILGAAKMLPPRKDKLEGTAKNLF 446
            VALR + + L  QE VE EHK K DG M ACG+DVH+ ++LGAAK+L  RK++++GT + LF
Sbjct:   92 VALRADMDALPVQELVEWEHKSKVDGVMHACGHDVHTAMLLGAAKLLSERKEQIKGTVRLLF 153          

HSP 2 Score: 33.4982 bits (75), Expect = 9.316e-16
Identity = 32/112 (28.57%), Postives = 44/112 (39.29%), Query Frame = 1
Query:  436 KIFSPPADDGGASAFHMRKYGARGDCNTILGNVYRHTKTKEKYSICV--LGPIWPLPGFLMKKQRGEVEPATMSHSKSDPKHTASAGIMSIETLNFKSSISPSKDPYGSRPL 765
            ++   PA++GGA A +M K G       I G    H   +    +     GP      F   K  G+   A   H   DP   AS  I+S++ L     IS   DP  S+ L
Sbjct:  150 RLLFQPAEEGGAGASYMIKDGVLDGVEAIFG---MHVDYRMPTGVIAAHAGPTQAAVCFYEAKIEGKTGKAETPHLNVDPIVAASFVILSLQQL-----ISREDDPLHSQVL 253          
BLAST of DY258877 vs. ExPASy Swiss-Prot
Match: ILL4_ARATH (IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsis thaliana GN=ILL4 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.091e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  261 VALRKNKNTLCFQERVE*EHKKKFDGKMRACGYDVHSTVILGAAKMLPPRKDKLEGTAKNLF 446
            VALR + + L  QE VE EHK K  GKM ACG+D H+T++LGAAK+L   +++L+GT   +F
Sbjct:  104 VALRADMDALAMQEMVEWEHKSKVPGKMHACGHDAHTTMLLGAAKLLKEHEEELQGTVVLVF 165          

HSP 2 Score: 25.7942 bits (55), Expect = 1.091e-12
Identity = 27/103 (26.21%), Postives = 43/103 (41.75%), Query Frame = 1
Query:  451 PADDGGASAFHMRKYGARGDCNTILGNVYRHTKTKEKYSICVLGPIWPLPGFLMKKQRGEVEPATMSHSKSDPKHTASAGIMSIETLNFKSSISPSKDPYGSR 759
            PA++GG  A  + + G   + + I G    +     + S    GP+    GF   K  G+   A +     DP   AS  I+S++ L     +S   DP  S+
Sbjct:  167 PAEEGGGGAKKIVEAGVLENVSAIFGLHVTNQLALGQVSSRE-GPMLAGSGFFKAKISGKGGHAALPQHTIDPILAASNVIVSLQHL-----VSREADPLDSQ 263          
BLAST of DY258877 vs. ExPASy Swiss-Prot
Match: ILL1_ORYSJ (IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. japonica GN=ILL1 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.929e-11
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 3
Query:  261 VALRKNKNTLCFQERVE*EHKKKFDGKMRACGYDVHSTVILGAAKMLPPRKDKLEGTAKNLF 446
            VALR + + L  QE VE EHK K  GKM  CG+D H  ++LG+A++L   +D+L+GT   +F
Sbjct:  105 VALRADMDALPMQESVEWEHKSKVPGKMHGCGHDAHVAMLLGSARILQEHRDELKGTVVLVF 166          

HSP 2 Score: 28.4906 bits (62), Expect = 1.929e-11
Identity = 30/107 (28.04%), Postives = 43/107 (40.19%), Query Frame = 1
Query:  451 PADDGGASAFHMRKYGARGDCNTILGNVYRHTKTKEKYSICVL----GPIWPLPGFLMKKQRGEVEPATMSHSKSDPKHTASAGIMSIETLNFKSSISPSKDPYGSR 759
            PA++GG  A  M   GA  +   I G         +   I V+    GP+    GF      G+   A + H   DP   AS  I+S++ L     +S   DP  S+
Sbjct:  168 PAEEGGGGAKKMIDDGAVENIEAIFG-----VHVADVVPIGVVASRPGPVMAGSGFFEAVISGKGGHAALPHHTIDPILAASNVIVSLQQL-----VSREADPLDSQ 264          
BLAST of DY258877 vs. ExPASy Swiss-Prot
Match: ILL1_ORYSI (IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sativa subsp. indica GN=ILL1 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 5.476e-11
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 3
Query:  261 VALRKNKNTLCFQERVE*EHKKKFDGKMRACGYDVHSTVILGAAKMLPPRKDKLEGTAKNLF 446
            VALR + + L  QE VE EHK K  GKM  CG+D H  ++LG+A++L   +D+L+GT   +F
Sbjct:  105 VALRADMDALPMQESVEWEHKSKVPGKMHGCGHDAHVAMLLGSARILQEHRDELKGTVVLVF 166          

HSP 2 Score: 26.9498 bits (58), Expect = 5.476e-11
Identity = 29/107 (27.10%), Postives = 42/107 (39.25%), Query Frame = 1
Query:  451 PADDGGASAFHMRKYGARGDCNTILGNVYRHTKTKEKYSICVL----GPIWPLPGFLMKKQRGEVEPATMSHSKSDPKHTASAGIMSIETLNFKSSISPSKDPYGSR 759
            PA++GG  A  M   G   +   I G         +   I V+    GP+    GF      G+   A + H   DP   AS  I+S++ L     +S   DP  S+
Sbjct:  168 PAEEGGGGAKKMIDDGTVENIEAIFG-----VHVADVVPIGVVASRPGPVMAGSGFFEAVISGKGGHAALPHHTIDPILAASNVIVSLQQL-----VSREADPLDSQ 264          
The following BLAST results are available for this feature:
BLAST of DY258877 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ILL3_ARATH5.641e-2056.45IAA-amino acid hydrolase ILR1-like 3 OS=Arabidopsi... [more]
ILL5_ORYSJ9.316e-1654.84IAA-amino acid hydrolase ILR1-like 5 OS=Oryza sati... [more]
ILL4_ARATH1.091e-1251.61IAA-amino acid hydrolase ILR1-like 4 OS=Arabidopsi... [more]
ILL1_ORYSJ1.929e-1146.77IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sati... [more]
ILL1_ORYSI5.476e-1146.77IAA-amino acid hydrolase ILR1-like 1 OS=Oryza sati... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DD12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258877 ID=DY258877; Name=DY258877; organism=Citrus clementina; type=EST; length=1142bp
GGCACAGTTATAGTTCTAGACATTGAGAATTAGGTTTTGTTGATGATGAT
GATGGTACCTAATATTTTGGTATGTTAAATTTGTCCGAGTCATCTAAATT
TATCTATCAATACTGACATTGCCAATCTCTTATAAACAAAAAAAAAAAAA
AAAAAAAACAAAAAAAAAGAAAAAAAAGAAAAAAAAGAAACCCCCTATTT
TTTCGCACAAATTGGGAATGAAAAAAAAGCTTGGTCATTGTCTTTGGTTC
GCGCGCTGGGGTCGCTTTGAGAAAAAATAAAAATACTCTTTGTTTCCAAG
AGCGCGTGGAATGAGAGCATAAGAAAAAATTTGATGGCAAAATGCGCGCA
TGTGGATATGACGTCCACAGCACCGTGATTCTTGGTGCTGCCAAGATGCT
TCCTCCACGTAAAGATAAACTTGAGGGAACTGCGAAAAATCTTTTCCCCA
CCTGCAGACGACGGAGGTGCAAGTGCCTTTCACATGAGAAAATACGGCGC
TCGTGGGGACTGCAACACAATACTTGGGAATGTGTATAGACATACGAAGA
CCAAAGAGAAGTACAGCATCTGTGTTCTGGGCCCCATTTGGCCGCTACCT
GGGTTTTTAATGAAAAAGCAAAGAGGAGAAGTGGAACCTGCCACAATGTC
TCATTCAAAAAGCGATCCAAAACATACTGCCTCCGCTGGCATTATGTCAA
TAGAAACACTTAATTTCAAAAGTAGCATATCCCCCTCCAAAGATCCATAT
GGCTCACGCCCCCTTTATCACATTTTATTCTCAACCCTGCCTATCTTTCT
GCCCTTTGCAAAGCAGAAAAATTCCCCCCTTCCCCTCCTAAATAATTTTT
CCCCGAAATTAACAACAGCCAGCAAAGAACCGACCAAAAAGAATTAAAAA
AGAAAAAAACCAATTTGAGATAATAACAACAATATTGGCTTCCCGGGGTG
ACAGGCGGTTTTCCCCTGCCAATCATAGGCCAGAGGGAGCAAAAACAACC
ATTCAACAATTCTCATTTTCCTCTCGAATCAGATCGTATATCGAGTAGGT
CCTCTTCTAGGGACCCGTTCCTCCCCCCCCCGCCGAGTGCCCTCCGCTCA
TACACTCCTCCTACAACACCTGAGCTCCTTCAAGCAGCGGGT
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