DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1278 contig Ccv1_Contig1278:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 1.125e-102
Identity = 183/223 (82.06%), Postives = 197/223 (88.34%), Query Frame = 3
Query:    3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            NPLCLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI  QMR LDYGVD  VGTPGRVIDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+ILE+LP+ RQ MMFSATMP WIRSLT KYL NPLTVDLVGDSDQKLADGI  YSI    Y + SIIG L+TEHAKGGKCIVFTQTKRDADRL++A+A+S+ CE LHGDISQSQRERTL+ FRDG FN
Sbjct:  178 NPLCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQRERTLAGFRDGHFN 400          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 362.073 bits (928), Expect = 1.521e-99
Identity = 176/223 (78.92%), Postives = 193/223 (86.55%), Query Frame = 3
Query:    3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            NP CLVLAPTRELA+QVEKEF ESAPSLDTIC+YGGTPI  QMR L+YG+D  VGTPGR+IDL+KR ALNLSEVQFVVLDEADQML VGFAEDVE+IL++LP  RQ MMFSATMP WIRSLT KYL NPLT+DLVGDSDQKLADGI +YSIA   Y + SIIG L+ EH KGGKCIVFTQTKRDADRLA  +AKSY CE LHGDISQ+QRERTL+ FRDG F+
Sbjct:  190 NPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVKEHGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFS 412          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 3.171e-97
Identity = 171/223 (76.68%), Postives = 197/223 (88.34%), Query Frame = 3
Query:    3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            NPL ++LAPTRELA+QVEKEF ESAP LD++CVYGG PISHQMRAL+YGVD VVGTPGR+IDL++R  LNLSE+QFVVLDEADQML+VGF EDVEVI+E LPQNRQ M+FSATMP WIR +T+KYLK+P+ +DLVGD DQKL +GI LYSIA+  Y KPSI+G LI EHA GGKCIVFTQTKR+ADRLA+AM +SY C+ LHGDISQ+QRERTLS FRDGRFN
Sbjct:  158 NPLAIILAPTRELARQVEKEFKESAP-LDSLCVYGGVPISHQMRALNYGVDVVVGTPGRIIDLLRRGVLNLSEIQFVVLDEADQMLAVGFDEDVEVIMENLPQNRQSMLFSATMPSWIRKITSKYLKDPIIIDLVGDEDQKLPEGISLYSIASEHYGKPSILGPLIKEHANGGKCIVFTQTKREADRLAYAMGRSYACQALHGDISQNQRERTLSGFRDGRFN 379          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH9_ORYSJ (DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sativa subsp. japonica GN=Os12g0611200 PE=3 SV=1)

HSP 1 Score: 333.183 bits (853), Expect = 7.565e-91
Identity = 160/222 (72.07%), Postives = 194/222 (87.39%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            PL +VLAPTRELAKQVE+EF +S+ +++TICVYGGTPIS Q+R L+YGVD V+GTPGRVIDL+KR ALNLSEV+FVVLDEADQMLSVGF EDVE IL+R+P  RQ +MFSATMP WI+ LT KYLKNP+T+DLVG+ DQKLA+GI LYSIA+  + KP+++G+LI EHAKGGKCIVFTQTKRDADRL++ M +S+ C+ LHGDI+Q+QRERTL  FR+G FN
Sbjct:  173 PLAIVLAPTRELAKQVEREFSDSS-NVETICVYGGTPISQQIRQLNYGVDVVIGTPGRVIDLLKRGALNLSEVRFVVLDEADQMLSVGFDEDVETILDRVPPKRQTLMFSATMPTWIQRLTQKYLKNPVTIDLVGEDDQKLAEGISLYSIASEGHAKPAVLGELIKEHAKGGKCIVFTQTKRDADRLSYTMGRSFQCQALHGDITQAQRERTLKGFREGHFN 393          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 283.493 bits (724), Expect = 6.874e-76
Identity = 144/221 (65.16%), Postives = 170/221 (76.92%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            P  LVLAPTRELAKQVEKE  ESAP L T+CVYGG   + Q  AL  GVD VVGTPGR+IDLI+  +L L EV+++VLDEADQML+VGF E VE ILE LP  RQ M+FSATMP W++ L  KYL NPL +DLVGD D+KLA+GI LY+IAT+   K +I+  LIT +AKGGK IVFTQTKRDAD ++ A++ S   E LHGDISQ QRERTL+AFR G+F
Sbjct:  181 PKFLVLAPTRELAKQVEKEIKESAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLAEGIKLYAIATTSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQGKF 401          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 4.456e-75
Identity = 139/221 (62.90%), Postives = 169/221 (76.47%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            P  LVLAPTRELAKQVEKE  ESAP L T+CVYGG   + Q  AL  GVD VVGTPGR+IDLI   +L L EV+++VLDEADQML+VGF EDVE IL++LP  RQ M+FSATMP W++ L+ +YL NPLT+DLVGD D+KLA+GI LY+I  +   K +++  LIT +AKGGK IVFT+TKRDAD ++ A+  S   E LHGDISQ QRERTL+ FR G+F
Sbjct:  181 PRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKF 401          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.183e-43
Identity = 100/226 (44.25%), Postives = 137/226 (60.62%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQGMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            P  LVL PTRELA QV  +F  +  A  L    VYGG P   Q+ +L  GVD VVGTPGRV DL+++  L L  + F VLDEAD+ML +GF +DVE+IL ++      Q ++FSAT+P W++ ++ ++LK+   TVDLV D   K +  +    I  S   +P +I  +I  +  GG+ I+FT+TK  A +LA  +       PLHGDI Q+QRE TL  FR G+F
Sbjct:  186 PSVLVLLPTRELATQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGVDIVVGTPGRVKDLLEKGVLKLGSLLFRVLDEADEMLKMGFVDDVELILGKVDHVSKVQTLLFSATLPSWVKQISTRFLKSAKKTVDLVSDQKMKASISVRHIVIPCSASARPDLIPDIIRCYGSGGRSIIFTETKESASQLAGLLT---GARPLHGDIQQTQREVTLKGFRTGKF 408          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.443e-43
Identity = 96/228 (42.11%), Postives = 137/228 (60.09%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            P  LVLAPTRELA QV K+F +    L   C YGGTP   Q+  +  G+D +VGTPGR+ D ++   L+L++++ VVLDE DQML +GFA+ VE IL     +    N Q ++FSAT P W+ ++  KY+K+    VDL+G   QK A  +   +I     E+ ++IG +I  ++   G+ I+F +TK+DA  L+       + + LHGDI Q QRE TL  FR+G F
Sbjct:  257 PQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNF 484          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.443e-43
Identity = 96/228 (42.11%), Postives = 137/228 (60.09%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            P  LVLAPTRELA QV K+F +    L   C YGGTP   Q+  +  G+D +VGTPGR+ D ++   L+L++++ VVLDE DQML +GFA+ VE IL     +    N Q ++FSAT P W+ ++  KY+K+    VDL+G   QK A  +   +I     E+ ++IG +I  ++   G+ I+F +TK+DA  L+       + + LHGDI Q QRE TL  FR+G F
Sbjct:  333 PQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQIERMRSGIDILVGTPGRIKDHLQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILCVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKAAITVEHLAIKCHWTERAAVIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQDAQSLHGDIPQKQREITLKGFRNGNF 560          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.671e-43
Identity = 96/229 (41.92%), Postives = 137/229 (59.83%), Query Frame = 3
Query:    3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            +P  LVLAPTRELA QV K+F +    L   C YGGT    Q+  +  G+D +VGTPGR+ D ++   L+LS+++ VVLDE DQML +GFAE VE I+          N Q ++FSAT P W+  +  KY+K+    VDLVG   QK A  +   +I     ++P++IG ++  ++   G+ I+F +TK++   +A       N + LHGDI+QSQRE TL  FR+G F
Sbjct:  208 SPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINQIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSF 436          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH53_ARATH1.125e-10282.06DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
RH9_ARATH1.521e-9978.92DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]
RH53_ORYSJ3.171e-9776.68DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]
RH9_ORYSJ7.565e-9172.07DEAD-box ATP-dependent RNA helicase 9 OS=Oryza sat... [more]
RH3_ARATH6.874e-7665.16DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH3_ORYSJ4.456e-7562.90DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
RH7_SPIOL1.183e-4344.25DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia ... [more]
DDX21_RAT3.443e-4342.11Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=D... [more]
DDX21_MOUSE3.443e-4342.11Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 ... [more]
DDX50_MOUSE7.671e-4341.92ATP-dependent RNA helicase DDX50 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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