DY258885

Overview
NameDY258885
Unique NameDY258885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1168
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:292..1459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 563.148 bits (1450), Expect = 1.076e-159
Identity = 287/314 (91.40%), Postives = 300/314 (95.54%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSNV 943
            RYEIHHKLRYTDE LV+AAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEA+ELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQI+AL+DK KE+SKAE+EA D GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH R+IGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVF+MML  LEDGRLT+ KGR VDF+ T   MTSNVGS+V
Sbjct:  449 RYEIHHKLRYTDEDLVAAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEAKELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQITALIDKNKEVSKAESEAADTGPLVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRIIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 762          
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 554.673 bits (1428), Expect = 3.825e-157
Identity = 285/315 (90.48%), Postives = 298/315 (94.60%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDV-GPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSNV 943
            RYEIHHKL YTDEA+ +AA+LS+QYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISAL+DK KE SKAE+EAGD  GP+VTE DIQHIVS+WTGIPVEKVSTDESDRLLKMEETLH RVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAK+LA YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVF+MML  LEDGRLT+ KGR VDF+ T   MTSNVGS+V
Sbjct:  451 RYEIHHKLHYTDEAIEAAAKLSHQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALIDKNKEKSKAESEAGDAAGPIVTEADIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHTRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 765          
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 550.821 bits (1418), Expect = 5.524e-156
Identity = 277/314 (88.22%), Postives = 298/314 (94.90%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSNV 943
            RYEIHHKLRYTDEAL++AAQLSYQYISDRFLPDKAIDL+DEAGSRVRL+HAQLPEEA+EL+KE+R+I KEK E VR QDFEKAGELRD+EMDLKAQISAL++KGKEMSKAETE  D GP+VTEVDIQHIVS+WTGIPV+KVS DESDRLLKME+TLHKR+IGQDEAV+AISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVF+MML  LEDGRLT+ KGR VDF+ T   MTSNVGS+V
Sbjct:  449 RYEIHHKLRYTDEALIAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLQHAQLPEEAKELDKEVRKIVKEKEEYVRNQDFEKAGELRDKEMDLKAQISALIEKGKEMSKAETETADEGPIVTEVDIQHIVSSWTGIPVDKVSADESDRLLKMEDTLHKRIIGQDEAVQAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSV 762          
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 534.258 bits (1375), Expect = 5.350e-151
Identity = 288/356 (80.90%), Postives = 315/356 (88.48%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSNVN*KREGPPLWF*FLIYERRKNANYNQELKILGKLKKFETQYF 1069
            RYEIHHKLRYTDE+LV+AAQLSYQYISDRFLPD+AIDL+DEAGSRVRLRHAQ+PEEARELEKELRQITKE NEAVRGQDFEKAG LRDRE++L+A++SA+  KGKEMSKAE+E GD GP+VTE DIQHIVS+WTGI VEKVSTDESD LLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIF GPTGVGKSELAKALAAYYFG EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE  QLTEAVRRRPYTVVLFDEIEKAHPDVF+MML  LEDGRLTN KGR VDF+ T   MTSNVGS+V  ++ G  + F  L YE  K+++YN+   ++ +  K   QYF
Sbjct:  398 RYEIHHKLRYTDESLVAAAQLSYQYISDRFLPDRAIDLMDEAGSRVRLRHAQVPEEARELEKELRQITKE-NEAVRGQDFEKAGTLRDREIELRAEVSAIQAKGKEMSKAESETGDEGPMVTESDIQHIVSSWTGILVEKVSTDESDLLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEPPQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTNSKGRTVDFKNTLLIMTSNVGSSVI-EKGGRRIGF-DLDYE--KDSSYNRIKSLVTQELK---QYF 745          
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 446.047 bits (1146), Expect = 1.916e-124
Identity = 230/316 (72.78%), Postives = 268/316 (84.81%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVD--KGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSNV 943
            RYE HHKL  +DEAL +AA+ + QYI+DRFLPDKAIDLIDEAGSRVRL ++QLP  AREL+KELR+I K+K+EAVR QDFE AG+LRDREM++KAQI+A+    KG E +  E        VVTE DI  IV+AWTGIPV K++  ES++LL+MEETLH R+IGQDEAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSEEAM+RLDMSE+MERHTVSKLIGSPPGYVGY EGGQLTE+VRRRPYTVVLFDEIEK HPDVF+++L  LEDGRLT+ KGR VDF+ T   +TSNVGS V
Sbjct:  356 RYEKHHKLVISDEALSAAAKFADQYIADRFLPDKAIDLIDEAGSRVRLMNSQLPPAARELDKELREILKQKDEAVRSQDFETAGQLRDREMEIKAQIAAIAHSKKGDEENTKEVS------VVTEEDIAQIVAAWTGIPVNKMTRSESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTESVRRRPYTVVLFDEIEKGHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLILTSNVGSKV 665          
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 5.400e-119
Identity = 223/349 (63.90%), Postives = 277/349 (79.37%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSNVN*KREGPPLWF*F------LIYERRKNANYNQELK 1030
            RYE HH+L+ +D A+V+AA+LS QYI+DRFLPDKAIDL+DEA SRVRL + +LP  A  L++ELR I K KNE +R  DFE+A + R+RE+++K Q++AL+   KE  + E       P+V E DI +IVS+WTGIPV K++  ES++LL MEETLH R++GQ+EAV A+S+AIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KA+A+Y+FGSEEAM+RLDMSE+MERHTVSKLIGSPPGYVGY EGGQLTEAVR+RPYTVVLFDEIEKAHPDVF+++L  LEDGRLT+ KGR +DF+ T   MTSN+GS V  +++G  L F        L Y R +N   N+ELK
Sbjct:  387 RYEAHHRLKISDSAIVAAAKLSDQYIADRFLPDKAIDLVDEASSRVRLMNYKLPPSAEYLDEELRHIQKIKNELIRSGDFEEASQFREREIEVKVQMAALMKAKKEAIEEELALNP--PIVNEDDIANIVSSWTGIPVSKLTKSESEKLLHMEETLHSRIVGQNEAVIAVSKAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRKRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDSKGRTIDFKNTLLIMTSNIGSKVI-EKKGGGLGFELEENIEELQYSRMRNL-VNEELK 731          
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 427.557 bits (1098), Expect = 7.053e-119
Identity = 224/356 (62.92%), Postives = 277/356 (77.81%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSNVN*KREGPPLWF*FLIYERRKNANYNQELKILGKLKKFETQYF 1069
            RYE HH+L  +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP  AREL+KELR + K K+EA+R Q +E A + R REM++KAQI+A+     +  K E +     PVVTE DI  IV+AWTGIPV K++  ES++L++MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKLIGSPPGYVGY+EGG LTEAVR++PYTV+LFDEIEKAHPD+F+++L  LEDGRLT+ KGR +DF+ T   MTSN+GS V  K  G       L +E  ++   +Q  ++   + +   QYF
Sbjct:  359 RYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAVLKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKGGGS------LGFELSEDQTESQYTRVRSLVNEELKQYF 704          
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 9.211e-119
Identity = 224/356 (62.92%), Postives = 276/356 (77.53%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSNVN*KREGPPLWF*FLIYERRKNANYNQELKILGKLKKFETQYF 1069
            RYE HH+L  +D AL +AA+ + QYISDRFLPDKAIDLIDEAGSRVRL ++QLP  AREL+KELR + K K+EA+R Q +E A + R REM++KAQI+A+     +  K E +     PVVTE DI  IV+AWTGIPV K++  ES++L+ MEETLH R+IGQDEAV A+SRAIRRARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKLIGSPPGYVGY+EGG LTEAVR++PYTV+LFDEIEKAHPD+F+++L  LEDGRLT+ KGR +DF+ T   MTSN+GS V  K  G       L +E  ++   +Q  ++   + +   QYF
Sbjct:  359 RYEKHHQLTMSDGALAAAAKYANQYISDRFLPDKAIDLIDEAGSRVRLLNSQLPPAARELDKELRAVLKTKDEAIRAQKYETAEQYRAREMEIKAQIAAIA----QSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMHMEETLHGRIIGQDEAVVAVSRAIRRARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEKAHPDIFNLLLQILEDGRLTDAKGRTIDFKNTLLIMTSNIGSKVIEKGGGS------LGFELSEDQTESQYTRVRSLVNEELKQYF 704          
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 378.252 bits (970), Expect = 4.907e-104
Identity = 189/313 (60.38%), Postives = 240/313 (76.68%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSN 940
            RYE HH++  TDEA+ +AA LS +YI+DRFLPDKAIDLIDEAGS+VRLR   +P   +ELE++L ++ KEK+ AV+ Q+FEKA  LRD E   + ++    ++ KE      + G     VT  DI  +VS WTG+PV K++ DE+DRLL ME+ LH RVIGQ EAV A+++AIRRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   F  E+AMIR+DMSE+MERH  S+L+GSPPGYVGY EGGQLTE VRR+PY+VVL DE+EKAHP+VF+++L  LEDGRLT+ KGR+VDF+ T   MTSNVG++
Sbjct:  360 RYEAHHRVTITDEAIEAAASLSDRYITDRFLPDKAIDLIDEAGSKVRLRSYTVPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDSEQRFREELETTKNQWKE------KQGQTDSEVTMEDIAAVVSTWTGVPVSKLTKDETDRLLNMEKILHDRVIGQSEAVNAVAKAIRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAEVMFADEDAMIRIDMSEYMERHATSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSNVGAS 666          
BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 1.093e-103
Identity = 196/350 (56.00%), Postives = 258/350 (73.71%), Query Frame = 2
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGELRDREMDLKAQISALVDKGKEMSKAETEAGDVGPVVTEVDIQHIVSAWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFHMMLSNLEDGRLTNRKGRIVDFQITPSNMTSNVGSNVN*KREGPPLWF*FLIYERRKNANYNQELKILGKLKK 1051
            RYE HH++  TD+A+ +A +LS +YISDRFLPDKAIDLIDEAGS+VRLR    P   +ELE++L ++ KEK+ AV+ Q+FEKA  LRD E  L+ Q+       KE      + G     VT  DI  +VS+WTG+PV K++  E+D+LL ME  LH RVIGQDEAV A+++A+RRAR GLK+P RPI SFIF GPTGVGK+ELA+ALA   FG EE+MIR+DMSE+ME+H+ S+L+GSPPGYVGY EGGQLTE VRR+PY+VVL DEIEKAHPDVF+++L  LEDGRLT+ KGR VDF+ T   MTSNVG++   + +    +  F + +  +N + + + K++G+LK+
Sbjct:  357 RYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKE------KQGQENSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNK----YVGFNVQDETQN-HKDMKDKVMGELKR 695          
The following BLAST results are available for this feature:
BLAST of DY258885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
CLPAB_SOLLC1.076e-15991.40ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC3.825e-15790.48ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA5.524e-15688.22ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA5.350e-15180.90ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH1.916e-12472.78ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA5.400e-11963.90ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU7.053e-11962.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE9.211e-11962.92ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_OCEIH4.907e-10460.38Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPC_BACSU1.093e-10356.00Negative regulator of genetic competence clpC/mecB... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DE10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258885 ID=DY258885; Name=DY258885; organism=Citrus clementina; type=EST; length=1168bp
GCGATATGAAATTCACCACAAGCTTCGTTACACTGATGAAGCACTAGTTT
CTGCTGCTCAGTTGTCATACCAGTACATCAGTGACCGTTTTCTCCCTGAT
AAAGCTATTGATTTGATTGATGAAGCTGGTTCTCGGGTTCGTCTTCGTCA
TGCACAGCTCCCCGAGGAAGCTAGAGAGCTTGAAAAAGAGCTCAGGCAGA
TAACTAAGGAGAAGAATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCT
GGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCT
TGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATG
TTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATTGTCTCAGCTTGG
ACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCT
CAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTG
TCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAAC
CCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGG
GAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGG
AGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTT
TCCAAGCTCATTGGTTCACCACCTGGTTATGTTGGTTACACTGAGGGTGG
TCAGCTGACTGAGGCTGTTCGCCGTCGTCCTTATACTGTTGTACTCTTTG
ATGAGATTGAAAAGGCTCATCCTGATGTCTTTCACATGATGCTTTCAAAT
CTCGAGGATGGAAGATTGACAAACCGCAAGGGAAGAATTGTAGACTTTCA
GATTACTCCTTCAAATATGACATCAAATGTTGGAAGCAATGTAAATTGAA
AAAGGGAAGGACCCCCCCTTTGGTTTTGATTTTTGATTTATGAAAGAAGA
AAAAACGCCAATTACAACCAGGAATTAAAAATCCTGGGAAAACTGAAGAA
ATTTGAAACCCAGTACTTTCCAGGGCCGGGAATTTCTTTTAAAAAAAAAT
GGGAAAAAAAAAAATAAATTTTTTTTCCCCCAAAAACCCCTCCCCCCAAG
ACCCCTGGAGAAGGTGTA
back to top