DY258889

Overview
NameDY258889
Unique NameDY258889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig903 contig Ccv1_Contig903:55..1297. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ1_ARATH (Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN=At1g60970 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.473e-45
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 2
Query:   62 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            M+  P +KNILLLDSEGKRVAVKYYS+DWPTNSA+EAFEK+VFTKTQKTNARTE E+  LE N++VYKFVQDLHFFVTGGE+ENELILA+VL+G FDAV LLLR NVDK+
Sbjct:    1 MELPPKVKNILLLDSEGKRVAVKYYSDDWPTNSAQEAFEKSVFTKTQKTNARTEVEVTALENNIVVYKFVQDLHFFVTGGEEENELILASVLEGLFDAVTLLLRSNVDKR 110          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ2_ARATH (Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN=At3g09800 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.280e-45
Identity = 88/110 (80.00%), Postives = 100/110 (90.91%), Query Frame = 2
Query:   59 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDK 388
            S D+CP +KNILLLDSEGKRVAVKYYS+DWPTN+AK +FEK VF+KT KTNARTEAEI +L+ N+IVYKF QDLHFFVTGGE+ENELILA+VLQGFFDAV LLLR NV+K
Sbjct:    2 SPDSCPLVKNILLLDSEGKRVAVKYYSDDWPTNAAKLSFEKYVFSKTSKTNARTEAEITLLDSNIIVYKFAQDLHFFVTGGENENELILASVLQGFFDAVALLLRSNVEK 111          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ3_ARATH (Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN=At4g08520 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 8.080e-44
Identity = 84/108 (77.78%), Postives = 98/108 (90.74%), Query Frame = 2
Query:   65 DTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDK 388
            D+CP +KNILLLDSEGKRVAVKYYS+DW TN++K AFEK VF+KT KTNARTEAEI +LE N++VYKF QDLHFFVTGGE+ENEL+L++VLQGFFDAV LLLR NV+K
Sbjct:    6 DSCPLVKNILLLDSEGKRVAVKYYSDDWATNASKLAFEKYVFSKTSKTNARTEAEITLLESNIVVYKFAQDLHFFVTGGENENELVLSSVLQGFFDAVALLLRNNVEK 113          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ1_ORYSJ (Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 8.934e-43
Identity = 82/110 (74.55%), Postives = 98/110 (89.09%), Query Frame = 2
Query:   62 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            M++CPS+KNILLLDSEGKRVAVKYY++DWPT SAK AFEK+VF KTQK  A  EAEI M +G+++VYKF+QDLHFFVTGGE+ENELILA+VLQGF DAV ++LR NVDK+
Sbjct:    1 MESCPSVKNILLLDSEGKRVAVKYYTDDWPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELILASVLQGFTDAVDIILRNNVDKR 110          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ2_ORYSJ (Coatomer subunit zeta-2 OS=Oryza sativa subsp. japonica GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.990e-42
Identity = 81/111 (72.97%), Postives = 101/111 (90.99%), Query Frame = 2
Query:   59 SMDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            S ++CPS+KNILLLDSEGKRVAVKY+S+DW +N++K AFEK+VFTKT KTNAR+EAEI + +G ++VYKFVQDLHFFVT G+DENELI+A VLQGF D+VGLLLRG+V+K+
Sbjct:    5 SKESCPSVKNILLLDSEGKRVAVKYFSDDWSSNASKLAFEKSVFTKTLKTNARSEAEITLFDGYIVVYKFVQDLHFFVTAGDDENELIIANVLQGFSDSVGLLLRGDVEKR 115          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ3_ORYSJ (Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.177e-40
Identity = 77/110 (70.00%), Postives = 97/110 (88.18%), Query Frame = 2
Query:   62 MDTCPSIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            M++CPS+KNIL+LDSEGKRVAVKYYS+DWP+ S+K+AFEK+VF KTQKT+ARTEAEI M +   +VYKF+QDLHFFVTGG++ENELILA+VLQGF +A+  LLR  V ++
Sbjct:    1 MESCPSVKNILVLDSEGKRVAVKYYSDDWPSLSSKQAFEKSVFAKTQKTSARTEAEIVMFDSYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRR 110          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ1_BOVIN (Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.813e-19
Identity = 49/105 (46.67%), Postives = 73/105 (69.52%), Query Frame = 2
Query:   77 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L TVL   FD++  +LR NV+K+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKR 112          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ1_PONAB (Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 2
Query:   77 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 112          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ1_MOUSE (Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 2
Query:   77 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 112          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ1_HUMAN (Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 2
Query:   77 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            ++K IL+LD++G R+  KYY + +P+   ++AFEK +F KT     RT++EIA+LEG  +VYK   DL+F+V G   ENEL+L  VL   FD++  +LR NV+K+
Sbjct:   12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH----RTDSEIALLEGLTVVYKSSIDLYFYVIGSSYENELMLMAVLNCLFDSLSQMLRKNVEKR 112          
The following BLAST results are available for this feature:
BLAST of DY258889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPZ1_ARATH1.473e-4580.00Coatomer subunit zeta-1 OS=Arabidopsis thaliana GN... [more]
COPZ2_ARATH3.280e-4580.00Coatomer subunit zeta-2 OS=Arabidopsis thaliana GN... [more]
COPZ3_ARATH8.080e-4477.78Coatomer subunit zeta-3 OS=Arabidopsis thaliana GN... [more]
COPZ1_ORYSJ8.934e-4374.55Coatomer subunit zeta-1 OS=Oryza sativa subsp. jap... [more]
COPZ2_ORYSJ1.990e-4272.97Coatomer subunit zeta-2 OS=Oryza sativa subsp. jap... [more]
COPZ3_ORYSJ3.177e-4070.00Coatomer subunit zeta-3 OS=Oryza sativa subsp. jap... [more]
COPZ1_BOVIN1.813e-1946.67Coatomer subunit zeta-1 OS=Bos taurus GN=COPZ1 PE=... [more]
COPZ1_PONAB6.888e-1945.71Coatomer subunit zeta-1 OS=Pongo abelii GN=COPZ1 P... [more]
COPZ1_MOUSE6.888e-1945.71Coatomer subunit zeta-1 OS=Mus musculus GN=Copz1 P... [more]
COPZ1_HUMAN6.888e-1945.71Coatomer subunit zeta-1 OS=Homo sapiens GN=COPZ1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DF06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258889 ID=DY258889; Name=DY258889; organism=Citrus clementina; type=EST; length=1243bp
GGGAGTCTCAACGCTCGAAATTAATTGACTGCAGACGACCAGGTTTAATC
GAACGACAAGCATGGATACTTGTCCGTCCATAAAGAATATCCTTCTCCTG
GATTCTGAAGGGAAACGTGTAGCAGTCAAGTATTATTCAAATGACTGGCC
AACCAATAGTGCAAAGGAAGCTTTTGAGAAAGCTGTGTTTACCAAGACCC
AGAAAACAAATGCACGGACCGAAGCGGAGATAGCTATGCTTGAGGGCAAC
GTTATTGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTCACTGGTGG
TGAAGATGAAAATGAGCTGATCTTAGCCACAGTTCTTCAGGGATTTTTTG
ATGCAGTTGGTCTTCTTCTTAGAGGCAATGTGGACAAGAAGGAGGCTCTT
GAGAACTTGGATCTTATCTTGTTGTGCCTTGATGAATTGTTGATGGAGGG
TATGCAACGTGCTACTCGTTTATATTGTTAATCAACTTTGACTGCTGAAC
TTATCCAAAGTTGCCTCTGATCTGATATGATTTGCCGAGATTTAAAACAT
GGAAAGATTGCATCCCTTGGATTCCAAGTTTGTAAAAGTCTATTGTGCTG
AAAACATTCAATTGCTTGTAACTAAAAAGCACATACATGGCAAACAACTT
GTGGAGGATCAGTATGAGTTAGGCATTGTTATTTGAAACTGCCTATTGAC
ATCTTTATCTTTAGGATTCTTGGGAAAATTCAATTGGTCTTGTTAGGTTA
TTATTATATCCTTCCGATCCCCAAATCCCCTTGGAGGTTGTTAGCACACT
GGCGTAATGGTTGGATGGGCTGGGCCATAACATTCCGAAAACTGATGCAA
ATGTCTTTGCTGGAAAGGGTCCAGCCCAAATTGTGGAAGTTGGAACCTCC
TTTGCTGAAAAAAAAATTTACCCAGCCTTGGCTTACTGCCCCGGAAAATT
TAAACAGAATCCCCTCTTTAGGTAGGATTGCACCCAAAAAAAGGGGGAAA
AGCAAGAGTTCTTTGATTTTTTCTCCGTTTTTTACCAATAAAGGGAATTT
CCCGGGTAAGGGAGACCTCCCCCCAATTTTGGCTTTTCTTTTATTATTTA
TAAAAAAAGGAAACCCTCCCATTTTTTTTGGCTTGGCAAAAAAAAGTTTT
GTCTCCCCACTTCGGGGGGGGGGGTTTCGTCGGGGCCCGCCTTTCTTTTC
CCCAAATTTTTTTGCCAAAAAAAATTATTTTTAAATTTTTTGG
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