DY258890

Overview
NameDY258890
Unique NameDY258890
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1282 contig Ccv1_Contig1282:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258890 vs. ExPASy Swiss-Prot
Match: Y5208_ARATH (Uncharacterized protein At5g12080 OS=Arabidopsis thaliana GN=At5g12080 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 74/144 (51.39%), Postives = 111/144 (77.08%), Query Frame = 2
Query:    2 VVDEMNILTTIFLRYDKQRIYYPNSVLATKPISNFYRSPREMGDTVEFAIDVFTSVEIIDKLKYRIKDYLERKHKHWSGDHSVVVKDIEDVNKMRMTLYVTHTMNFQDYMKKLKRRSKLVLELKKIFEELGIRYNLLPQEVRVS 433
            +V+EMN+LTT+FL+ + +++YYPN+VLATKPISN++RSP  MG+TVEF+I   T V  I  LK RI +YLE+  +HW+  HSVVVK+IE++NK++M LY  HT+ FQ+  ++  RR++L L +K++ E+L I Y LLPQ++ ++
Sbjct:  589 LVEEMNLLTTVFLKLNNEKVYYPNAVLATKPISNYFRSPN-MGETVEFSISFSTPVSKIAHLKERIAEYLEQNPQHWAPVHSVVVKEIENMNKLKMALYSDHTITFQENRERNLRRTELSLAIKRMLEDLHIDYTLLPQDINLT 731          
BLAST of DY258890 vs. ExPASy Swiss-Prot
Match: Y1861_ARATH (Uncharacterized mscS family protein At1g78610 OS=Arabidopsis thaliana GN=At1g78610 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.109e-33
Identity = 72/143 (50.35%), Postives = 97/143 (67.83%), Query Frame = 2
Query:    2 VVDEMNILTTIFLRYDKQRIYYPNSVLATKPISNFYRSPREMGDTVEFAIDVFTSVEIIDKLKYRIKDYLERKHKHWSGDHSVVVKDIEDVNKMRMTLYVTHTMNFQDYMKKLKRRSKLVLELKKIFEELGIRYNLLPQEVRV 430
            VV+EMNILTT+FLR+D Q++ YPNS+L TK I N+YRSP +MGD +EF+I + T  E I  +K RI  Y+E K  HW     +V KD+E +N +R+ ++ TH MN QD  +K  RRS+LV E+ KI  EL I Y L P ++ V
Sbjct:  688 VVEEMNILTTVFLRFDNQKVVYPNSLLWTKSIGNYYRSP-DMGDGIEFSIHITTPAEKIILIKQRITSYIEGKKDHWYPAPMIVFKDMESLNSVRIAVWPTHRMNHQDMGEKWARRSQLVEEIAKICRELDIEYRLYPLDINV 829          
The following BLAST results are available for this feature:
BLAST of DY258890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5208_ARATH1.081e-3751.39Uncharacterized protein At5g12080 OS=Arabidopsis t... [more]
Y1861_ARATH2.109e-3350.35Uncharacterized mscS family protein At1g78610 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DF07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258890 ID=DY258890; Name=DY258890; organism=Citrus clementina; type=EST; length=714bp
GGTTGTTGATGAGATGAACATTTTGACAACAATCTTTCTGAGATATGACA
AGCAGAGGATATATTATCCAAATTCAGTTCTAGCAACCAAACCCATCAGT
AACTTTTACAGGAGCCCGCGAGAGATGGGTGATACGGTGGAGTTTGCAAT
TGATGTTTTCACATCAGTTGAGATCATTGACAAACTAAAATATAGAATAA
AAGACTACTTGGAGAGGAAGCACAAGCATTGGAGTGGAGATCACAGTGTG
GTGGTGAAGGATATTGAGGATGTGAATAAGATGAGAATGACTCTCTATGT
TACTCATACCATGAACTTTCAGGATTACATGAAGAAACTTAAACGGAGAT
CCAAATTAGTCTTAGAGCTAAAGAAAATATTTGAAGAACTTGGTATCAGA
TACAATCTTCTTCCTCAAGAAGTTCGGGTTAGCTACGCGGGGCGCTAACC
AGTAGCCATCATGTGTTGAATATTAAACCCGATGTACACAGAGACCAATT
AAGCCCAATTTTCAGAAGTACCTAAGTTTGGTAAGTTTGTGTGAAATATG
TTATAGTTTACATTTGTGGCGGTAAGTTTAGTATGTAAAATTTGGGTAGT
TGAAATGTGTGGTGACTGATGAGTTTGGGTAGTTGAAATATATGGTTATG
AATGGTTTGCTTCATGTATAATTAAATGCTCCTGTGCTGTACCAATAAAG
TGTTGGCTCCACTG
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