DY258903

Overview
NameDY258903
Unique NameDY258903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length947
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX1_ARATH (Phospholipid hydroperoxide glutathione peroxidase 1, chloroplastic OS=Arabidopsis thaliana GN=GPX1 PE=1 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 2.228e-61
Identity = 126/209 (60.29%), Postives = 145/209 (69.38%), Query Frame = 3
Query:  150 SIKASIGSAKPGLLQHGLFSQSSNLPGFFVKRRSFGAHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWT-------KMEKSSKRIPPLPPPSKLRRTTRNL 755
            S+K S G +    L +G   +S   PGF  K R F   A AA EK+++DFTVKDIDGKDV L+KFKGKV+LIVNVASRCGLT SNYSELSHLYEKYKTQGFEILAFPCNQFG QEPGSN EIK+FACTRFKAEFPIFDKVDVNGP+TAP+Y  LKS   G         L  ++KW        K  K  +R PP   P ++ +  + L
Sbjct:   33 SLKFSTGISNFANLSNGFSLKSPINPGFLFKSRPFTVQARAAAEKTVHDFTVKDIDGKDVALNKFKGKVMLIVNVASRCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGFQEPGSNSEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYEFLKSNAGG--------FLGGLIKWNFEKFLIDKKGKVVERYPPTTSPFQIEKDIQKL 233          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX7_ARATH (Putative glutathione peroxidase 7, chloroplastic OS=Arabidopsis thaliana GN=GPX7 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 8.465e-61
Identity = 123/202 (60.89%), Postives = 144/202 (71.29%), Query Frame = 3
Query:  150 SIKASIGSAKPGLLQHGLFSQSSNLPGFFVKRRSFGAHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWT-------KMEKSSKRIPPLPPPSKL 734
            S++ S  ++K     +G+  +SSN   F VK ++F  +A AA EKS++DFTVKDIDG DV L KFKGK LLIVNVASRCGLT SNYSELS LYEKYK QGFEILAFPCNQFGGQEPGSNPEIK+FACTRFKAEFPIFDKVDVNGP+TAP+Y  LKS   G         L +++KW        K  K  +R PP   P ++
Sbjct:   30 SLRFSTRTSKTRNPSNGVSVKSSNSHRFLVKSKNFSVYARAAAEKSVHDFTVKDIDGNDVSLDKFKGKPLLIVNVASRCGLTSSNYSELSQLYEKYKNQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPIYKFLKSNAGG--------FLGDIIKWNFEKFLVDKKGKVVERYPPTTSPFQI 223          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX1_PEA (Phospholipid hydroperoxide glutathione peroxidase, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.932e-58
Identity = 122/208 (58.65%), Postives = 142/208 (68.27%), Query Frame = 3
Query:  156 KASIGSAKPGLLQHGLFSQ-SSNLPGFFVKRRSFGAHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWT-------KMEKSSKRIPPLPPPSKLRRTTRNL 755
            K+SI S+K    Q G   Q SSN P    K RSF  +A A  +K++YDFTVKDID KDV LSKFKGKVLLIVNVASRCGLT SNY+ELSHLYE +K +G E+LAFPCNQFG QEPGSN EIK+FACT+FKAEFPIFDKVDVNGP TAPVY  LKS   G F         +++KW        K  K  +R PP   P ++ +  + L
Sbjct:   34 KSSIASSKSPFFQLGFSQQASSNFPIVPSKTRSFSVNAKAIKDKTIYDFTVKDIDKKDVSLSKFKGKVLLIVNVASRCGLTSSNYTELSHLYENFKNKGLEVLAFPCNQFGMQEPGSNEEIKQFACTKFKAEFPIFDKVDVNGPFTAPVYQFLKSSSGGFFG--------DIVKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKL 233          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX6_ARATH (Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial OS=Arabidopsis thaliana GN=GPX6 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 9.810e-51
Identity = 101/164 (61.59%), Postives = 116/164 (70.73%), Query Frame = 3
Query:  144 TNSIKASIGSAKPGLLQHGLFSQSSNLPGFFVKRRSFGAHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNF 635
            ++S      SAKP    H + S   +  G  + R S  + A ++  KSLYDFTVKD  G DV LS +KGKVLLIVNVAS+CGLT SNY+EL+ LYEKYK  GFEILAFPCNQFG QEPG+N EI +FACTRFKAE+PIFDKVDVNG   APVY  LKS   G F
Sbjct:   26 SSSSSKRFDSAKPLFNSHRIISLPISTTGAKLSR-SEHSMAASSEPKSLYDFTVKDAKGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTELAQLYEKYKGHGFEILAFPCNQFGNQEPGTNEEIVQFACTRFKAEYPIFDKVDVNGDKAAPVYKFLKSSKGGLF 188          

HSP 2 Score: 33.113 bits (74), Expect = 9.810e-51
Identity = 16/36 (44.44%), Postives = 20/36 (55.56%), Query Frame = 1
Query:  619 SAGGILGDLVKWNFEKFLSGQKWKSHRRESPPYLPL 726
            S GG+ GD +KWNF KFL  +      R +P   PL
Sbjct:  183 SKGGLFGDGIKWNFAKFLVDKDGNVVDRFAPTTSPL 218          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_CITSI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Citrus sinensis GN=CSA PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.938e-49
Identity = 87/120 (72.50%), Postives = 100/120 (83.33%), Query Frame = 3
Query:  276 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNF 635
            ++ S++DFTVKD  G+DV LS +KGK+LLIVNVAS+CGLT SNY+ELS LY+KYK QG EILAFPCNQFG QEPG N +I+EFACTRFKAEFPIFDKVDVNG N AP+Y  LKS   G F
Sbjct:    5 SKTSVHDFTVKDAKGQDVDLSIYKGKLLLIVNVASQCGLTNSNYTELSQLYDKYKNQGLEILAFPCNQFGAQEPGDNEQIQEFACTRFKAEFPIFDKVDVNGDNAAPLYKHLKSSKGGLF 124          

HSP 2 Score: 36.1946 bits (82), Expect = 8.938e-49
Identity = 16/36 (44.44%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  619 SAGGILGDLVKWNFEKFLSGQKWKSHRRESPPYLPL 726
            S GG+ GD +KWNF KFL  ++     R +P   PL
Sbjct:  119 SKGGLFGDSIKWNFSKFLVDKEGNVVERYAPTTSPL 154          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.264e-47
Identity = 84/116 (72.41%), Postives = 97/116 (83.62%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWG 629
            KS+YDFTVKDI G DV L ++KGK LL+VNVAS+CGLT +NY EL+ LYEKYK QG EILAFPCNQF GQEPG+N EI++  CTRFKAEFPIFDKVDVNG NTAP+Y  LK++  G
Sbjct:    7 KSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGG 122          

HSP 2 Score: 35.039 bits (79), Expect = 1.264e-47
Identity = 18/40 (45.00%), Postives = 21/40 (52.50%), Query Frame = 1
Query:  607 Y*SPSAGGILGDLVKWNFEKFLSGQKWKSHRRESPPYLPL 726
            Y     GG+L D +KWNF KFL     K  +R SP   PL
Sbjct:  115 YLKAEKGGLLIDAIKWNFTKFLVSPDGKVLQRYSPRTSPL 154          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.138e-47
Identity = 86/135 (63.70%), Postives = 101/135 (74.81%), Query Frame = 3
Query:  231 FFVKRRSFGAHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNF 635
            F++ R          +  S+Y+ +VKDI+GKDV LSKF GKVLLIVNVAS+CGLT  NY E++ LY KYKTQGFEILAFPCNQFG QEPGSN EIKE  C  FKAEFPIFDK++VNG NT P+Y+ LK +  G F
Sbjct:   29 FYLYRYPSSPSTVEQSSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLF 163          

HSP 2 Score: 34.2686 bits (77), Expect = 2.138e-47
Identity = 15/34 (44.12%), Postives = 20/34 (58.82%), Query Frame = 1
Query:  625 GGILGDLVKWNFEKFLSGQKWKSHRRESPPYLPL 726
            GG+ GD +KWNF KFL  ++     R +P   PL
Sbjct:  160 GGLFGDAIKWNFAKFLVDRQGNVVDRYAPTTSPL 193          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.015e-46
Identity = 80/118 (67.80%), Postives = 98/118 (83.05%), Query Frame = 3
Query:  276 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWG 629
            ++K+LYDFTVKD  G DV LS +KGKV+LIVNVAS+CGLT ++Y EL+ +Y KYK +GFEILAFPCNQFG QEPG+N EI +F CT+FK+EFPIFDK+DVNG N APVY  LK+  +G
Sbjct:    5 SKKTLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYG 122          

HSP 2 Score: 30.0314 bits (66), Expect = 1.015e-46
Identity = 13/26 (50.00%), Postives = 18/26 (69.23%), Query Frame = 2
Query:  674 VDKNGKVIEENPPPTSPFQIEKDNQK 751
            VDKNG+ ++   P TSP  +E+D QK
Sbjct:  137 VDKNGQPVDCYYPTTSPLTVERDIQK 162          

HSP 3 Score: 26.5646 bits (57), Expect = 1.015e-46
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 1
Query:  628 GILGDLVKWNFEKFL 672
            GILG  ++WNF KFL
Sbjct:  122 GILGGDIQWNFSKFL 136          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_NICSY (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.372e-46
Identity = 83/118 (70.34%), Postives = 96/118 (81.36%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNF 635
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EILAFPCNQFGGQEPGS  EI+   CTRFKAE+PIFDKVDVNG N AP+Y  LKS   G F
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFF 126          

HSP 2 Score: 34.6538 bits (78), Expect = 1.372e-46
Identity = 16/35 (45.71%), Postives = 19/35 (54.29%), Query Frame = 1
Query:  619 SAGGILGDLVKWNFEKFLSGQKWKSHRRESPPYLP 723
            S GG  GD +KWNF KFL  ++     R SP   P
Sbjct:  121 SKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTP 155          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_TOBAC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.330e-46
Identity = 82/118 (69.49%), Postives = 96/118 (81.36%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNF 635
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++++ +Y+KYK QG EILAFPCNQFGGQEPGS  EI+   CTRFKAE+PIFDKVDVNG N AP+Y  LKS   G F
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEEIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFF 126          

HSP 2 Score: 34.6538 bits (78), Expect = 2.330e-46
Identity = 16/35 (45.71%), Postives = 19/35 (54.29%), Query Frame = 1
Query:  619 SAGGILGDLVKWNFEKFLSGQKWKSHRRESPPYLP 723
            S GG  GD +KWNF KFL  ++     R SP   P
Sbjct:  121 SKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTP 155          
The following BLAST results are available for this feature:
BLAST of DY258903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GPX1_ARATH2.228e-6160.29Phospholipid hydroperoxide glutathione peroxidase ... [more]
GPX7_ARATH8.465e-6160.89Putative glutathione peroxidase 7, chloroplastic O... [more]
GPX1_PEA3.932e-5858.65Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX6_ARATH9.810e-5161.59Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_CITSI8.938e-4972.50Probable phospholipid hydroperoxide glutathione pe... [more]
GPX2_ARATH1.264e-4772.41Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX3_ARATH2.138e-4763.70Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX1_HELAN1.015e-4667.80Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX4_NICSY1.372e-4670.34Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_TOBAC2.330e-4669.49Probable phospholipid hydroperoxide glutathione pe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258903 ID=DY258903; Name=DY258903; organism=Citrus clementina; type=EST; length=947bp
GATTGCAACGCCTCTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTC
GAAGGATAACTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATG
CCCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATT
CAATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGG
CTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTC
CTTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCA
CCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGC
AAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATC
TAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGAT
TTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGA
TCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATT
TCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTT
ACCACTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAA
GTGGAACTTTGAGAAGTTCTTAAGTGGACAAAAATGGAAAAGTCATCGAA
GAGAATCCCCCCCCTACCTCCCCCTTCCAAATTGAGAAGGACAACCAGAA
ACCTTGGTGGGGAATGAAACCTGACTTGACCTGCTTGGCCAAGTCTCAAA
TGTATCCACCAAAAAAAAACCAAAAAAAAGTATATGTATATTTCTGAATC
CCGCATCACCTAAAAGGAATTTTTCCCCGGCCCCCCCCGAAATGGTGAAA
GGTTTTTAAACCCCAAAAAATACAAAAATTGGAACAAATTTCCTTGC
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