DY259707

Overview
NameDY259707
Unique NameDY259707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length979
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1289 contig Ccv1_Contig1289:1..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA8_ARATH (Auxin-responsive protein IAA8 OS=Arabidopsis thaliana GN=IAA8 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.868e-67
Identity = 121/180 (67.22%), Postives = 149/180 (82.78%), Query Frame = 1
Query:  112 KPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 651
            K +QE+++       N    APAAKAQVVGWPPIRS+RKNTMAS+  KN D  +GK G G L+VKVSMDGAPYLRKVDL+ Y++Y +LSSALEKMFSCFT+GQC  HG  G++ +SE +L DLLHGSE+VLTYED+DGDWMLVGDVPW++FTETC++L+IMKGS++IGLAP A+EK KN+
Sbjct:  143 KSIQEERSHAKGGLNN----APAAKAQVVGWPPIRSYRKNTMASSTSKNTDEVDGKPGLGVLFVKVSMDGAPYLRKVDLRTYTSYQQLSSALEKMFSCFTLGQCGLHGAQGRERMSEIKLKDLLHGSEFVLTYEDKDGDWMLVGDVPWEIFTETCQKLKIMKGSDSIGLAPGAVEKSKNK 318          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA27_ARATH (Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.740e-64
Identity = 125/182 (68.68%), Postives = 146/182 (80.22%), Query Frame = 1
Query:  130 KNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVK---NN---DAAEGKSG--SGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 651
            K  VP   +    +APA+KAQVVGWPPIRSFRKN+MAS+  +   NN   + AE KSG    CLYVKVSM+GAPYLRK+DLK Y +Y+ELSSALEKMFSCFTIGQ  SHG  G+DGL+ESRL DLL GSEYV+TYED+D DWMLVGDVPW+MF  +C++LRIMK SEAIGLAPR MEKC++R
Sbjct:  123 KPAVPVKEKKSSATAPASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCLYVKVSMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSHGGCGRDGLNESRLTDLLRGSEYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLAPRVMEKCRSR 304          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA21_ORYSJ (Auxin-responsive protein IAA21 OS=Oryza sativa subsp. japonica GN=IAA21 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 6.611e-64
Identity = 121/170 (71.18%), Postives = 139/170 (81.76%), Query Frame = 1
Query:  154 ENEPTSAPAAKAQVVGWPPIRSFRKNTMASN--LVKNNDAAEGKSG--SGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 651
            E +   APAAKAQVVGWPPIRS+RKNTMA +   +K  D  E K    SGCLYVKVSMDGAPYLRKVDLK+Y NY ELS ALEKMFSCFT+G  +S+G  G+DGLS+ RLMDL +G+E VLTYED+D DWMLVGDVPW MFT++CRRLRIMKGS+A+GLAPRA +K KNR
Sbjct:   96 EKKKAQAPAAKAQVVGWPPIRSYRKNTMAMSQPALKGKDDGEAKQAPASGCLYVKVSMDGAPYLRKVDLKMYKNYKELSLALEKMFSCFTVGHGESNGKSGRDGLSDCRLMDLKNGTELVLTYEDKDEDWMLVGDVPWRMFTDSCRRLRIMKGSDAVGLAPRATDKSKNR 265          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA9_ARATH (Auxin-responsive protein IAA9 OS=Arabidopsis thaliana GN=IAA9 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.777e-62
Identity = 114/167 (68.26%), Postives = 141/167 (84.43%), Query Frame = 1
Query:  157 NEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGL--APRAMEKCKNR 651
            N  +S PAAKAQ+VGWPP+RS+RKNT+A+   KN+D  +G+ GSG L+VKVSMDGAPYLRKVDL+ Y+NY ELSSALEKMF+ FT+GQC S+G  G+D LSE++L DLL+G +YVLTYED+DGDWMLVGDVPW+MF + C++L+IMKG +AIGL  APRAMEK K R
Sbjct:  172 NNSSSPPAAKAQIVGWPPVRSYRKNTLATTC-KNSDEVDGRPGSGALFVKVSMDGAPYLRKVDLRSYTNYGELSSALEKMFTTFTLGQCGSNGAAGKDMLSETKLKDLLNGKDYVLTYEDKDGDWMLVGDVPWEMFIDVCKKLKIMKGCDAIGLAAAPRAMEKSKMR 337          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA30_ORYSJ (Auxin-responsive protein IAA30 OS=Oryza sativa subsp. japonica GN=IAA30 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.777e-62
Identity = 118/171 (69.01%), Postives = 140/171 (81.87%), Query Frame = 1
Query:  160 EPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEG---KSGSGCL---YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 654
            +P    A KAQVVGWPP+RS+RKN +A    K  DAA+G   KSG+G     +VKVSMDGAPYLRKVDLK+Y +Y+ELS ALEKMFS FTIG C SHG+   +G++ES++ DLL+GSEYV TYED+DGDWMLVGDVPW+MF E+C+RLRIMKGSEAIGLAPRAMEKCKNR+
Sbjct:  110 DPEKPRAPKAQVVGWPPVRSYRKNILAVQADKGKDAADGGGDKSGAGAAAAAFVKVSMDGAPYLRKVDLKMYKSYLELSKALEKMFSSFTIGNCGSHGV---NGMNESKIADLLNGSEYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAMEKCKNRS 277          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA16_ARATH (Auxin-responsive protein IAA16 OS=Arabidopsis thaliana GN=IAA16 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 3.513e-57
Identity = 112/188 (59.57%), Postives = 136/188 (72.34%), Query Frame = 1
Query:  133 NQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGK-----------SGSGCL---YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 654
            ++V   N  E    P AKAQVVGWPP+RSFRKN M+       DA EG            S S C    YVKVSMDGAPYLRK+DLK+Y  Y +LS+AL KMFS FTIG     G+  +D ++ES+L+DLL+GS+YV TYED+DGDWMLVGDVPW+MF ++C+R+RIMKGSEAIGLAPRA+EKCKNR+
Sbjct:   51 SKVDLENMKEKVVKPPAKAQVVGWPPVRSFRKNVMSGQKPTTGDATEGNDKTSGSSGATSSASACATVAYVKVSMDGAPYLRKIDLKLYKTYQDLSNALSKMFSSFTIGNYGPQGM--KDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRIRIMKGSEAIGLAPRALEKCKNRS 236          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA17_ORYSJ (Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica GN=IAA17 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 5.073e-56
Identity = 113/161 (70.19%), Postives = 128/161 (79.50%), Query Frame = 1
Query:  172 APAAKAQVVGWPPIRSFRKNTMASNLVKNN-DAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 651
            APAAKAQVVGWPPIRS+RKNTMA+N +K++ + AE K G G LYVKVSMDGAPYLRKVDLK Y NY +LS+ALEKMF  FT G+         DGLSESR        EYVLTYED+DGDWMLVGDVPW+MF  +CRRLRIMKGS+AIGLAPRA++K KNR
Sbjct:  110 APAAKAQVVGWPPIRSYRKNTMATNQLKSSKEDAEAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDLSTALEKMFIGFTTGK---------DGLSESR-----KDGEYVLTYEDKDGDWMLVGDVPWEMFANSCRRLRIMKGSDAIGLAPRAVDKSKNR 256          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA19_ORYSJ (Auxin-responsive protein IAA19 OS=Oryza sativa subsp. japonica GN=IAA19 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 3.289e-55
Identity = 102/174 (58.62%), Postives = 130/174 (74.71%), Query Frame = 1
Query:  118 VQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK 639
            V+E++ +   L E    +  AAKAQVVGWPP+RS+RKNT+A++  K     +GKS  GC YVKVSMDGAPYLRKVDLK YS+Y +LS ALEKMFSCF  G+  SH    +D L++    D L   EYVLTYED+D DWMLVGD+PWD+FT +CR+LRIM+GS+A G+APR++E+
Sbjct:  103 VREEEEEEKGLGEAAAGAPRAAKAQVVGWPPVRSYRKNTLAASATKTKGEDQGKSEVGCCYVKVSMDGAPYLRKVDLKTYSSYEDLSLALEKMFSCFITGRSSSHKTSKRDRLTDGSRADALKDQEYVLTYEDKDADWMLVGDLPWDLFTTSCRKLRIMRGSDAAGMAPRSLEQ 276          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA14_ARATH (Auxin-responsive protein IAA14 OS=Arabidopsis thaliana GN=IAA14 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 3.636e-54
Identity = 104/162 (64.20%), Postives = 127/162 (78.40%), Query Frame = 1
Query:  169 SAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 654
            S P AKAQVVGWPP+R++RKN MA+      + A    G    +VKVSMDGAPYLRKVDLK+Y++Y +LS AL KMFS FT+G   + G+   D ++ES++MDLL+ SEYV +YED+DGDWMLVGDVPW MF E+C+RLRIMKGSEAIGLAPRAMEK KNR+
Sbjct:   69 SKPPAKAQVVGWPPVRNYRKNVMANQKSGEAEEAMSSGGGTVAFVKVSMDGAPYLRKVDLKMYTSYKDLSDALAKMFSSFTMGSYGAQGMI--DFMNESKVMDLLNSSEYVPSYEDKDGDWMLVGDVPWPMFVESCKRLRIMKGSEAIGLAPRAMEKFKNRS 228          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: AUX28_SOYBN (Auxin-induced protein AUX28 OS=Glycine max GN=AUX28 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 2.357e-53
Identity = 108/183 (59.02%), Postives = 134/183 (73.22%), Query Frame = 1
Query:  112 KPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAI--GLAPRAMEKCKNRT 654
            K + ++K  +PA       + P AK QVVGWPP+RSFRKN +A       ++ E  S     +VKVSMDGAPYLRKVDLK+Y +Y ELS +L KMFS FT G C+S G+  +D ++ES+L DLL+ S+YV TYED+DGDWMLVGDVPW+MF E+C+RLRIMKG EAI  GLAPRAM KCKNR+
Sbjct:   69 KTLPKEKTLLPA-----DPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEES-EKNSSPNASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCESQGM--KDFMNESKLNDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKCKNRS 243          
The following BLAST results are available for this feature:
BLAST of DY259707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA8_ARATH2.868e-6767.22Auxin-responsive protein IAA8 OS=Arabidopsis thali... [more]
IAA27_ARATH1.740e-6468.68Auxin-responsive protein IAA27 OS=Arabidopsis thal... [more]
IAA21_ORYSJ6.611e-6471.18Auxin-responsive protein IAA21 OS=Oryza sativa sub... [more]
IAA9_ARATH2.777e-6268.26Auxin-responsive protein IAA9 OS=Arabidopsis thali... [more]
IAA30_ORYSJ2.777e-6269.01Auxin-responsive protein IAA30 OS=Oryza sativa sub... [more]
IAA16_ARATH3.513e-5759.57Auxin-responsive protein IAA16 OS=Arabidopsis thal... [more]
IAA17_ORYSJ5.073e-5670.19Auxin-responsive protein IAA17 OS=Oryza sativa sub... [more]
IAA19_ORYSJ3.289e-5558.62Auxin-responsive protein IAA19 OS=Oryza sativa sub... [more]
IAA14_ARATH3.636e-5464.20Auxin-responsive protein IAA14 OS=Arabidopsis thal... [more]
AUX28_SOYBN2.357e-5359.02Auxin-induced protein AUX28 OS=Glycine max GN=AUX2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DB11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259707 ID=DY259707; Name=DY259707; organism=Citrus clementina; type=EST; length=979bp
GGTAAACCTGATGCCGAGTTGGGTAAAGGTGCTGTCTTGTATTCTCCTAG
AGGTGGGTTAGATGATAAGTGCAAGATCGTGAAGGAAGTTGATGTCTTGC
CTCTGTCTCCTAAGCCAGTTCAAGAGAAGAAGAATCAAGTCCCTGCTTTA
AATGAAAATGAACCAACTAGTGCCCCTGCTGCAAAGGCACAGGTGGTGGG
ATGGCCACCAATTCGATCTTTCCGGAAGAACACCATGGCCTCTAATTTGG
TAAAGAACAATGATGCCGCTGAAGGCAAGTCGGGATCTGGATGTCTCTAT
GTAAAGGTTAGCATGGATGGTGCTCCATATCTAAGGAAGGTTGATCTCAA
AATCTACAGCAATTACATGGAACTCTCTTCAGCTCTTGAGAAGATGTTCA
GCTGCTTTACCATTGGGCAATGTGATTCTCATGGTCTTCCGGGGCAAGAC
GGCCTAAGTGAGAGTCGTCTGATGGATCTTCTCCATGGTTCTGAATATGT
GCTTACATATGAAGACAGGGATGGTGACTGGATGCTTGTTGGTGATGTCC
CTTGGGATATGTTCACTGAGACGTGTAGAAGACTTCGCATCATGAAAGGT
TCAGAGGCTATTGGACTGGCTCCAAGGGCCATGGAGAAGTGCAAGAACCG
AACTTAGTGTCGCAAATATCTTGAAAGACTTAAAAAGGGAGAAAATTTGT
TTTTTTCAGAATCCAAACACGTGAAAAGATGTTAGGCATTTTTGTCAAGG
ACCCTATTATTATATAAATGTTATCAAATATCATAAGTTTGCTGTATTTA
ATTAGTTAATATGGGGAAAACATCCCTCTAAACAAGATAGCACTGCAAAC
ATATCCGTTTCACGTTTGTTTTAGTATTATATTTTGTCCTCCTTTACTTT
TCCGGGAAATTTTTTTATTTGGGAACAAAATATAAATGATTTGCTTGTTG
GTTTCCAGTTTGCCACTCTTCCCTGTTTA
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