DY259710

Overview
NameDY259710
Unique NameDY259710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1250
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259710_ssr452 microsatellite DY259710_ssr452:452..463. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 4.791e-28
Identity = 59/89 (66.29%), Postives = 72/89 (80.90%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQV++SLAPCI +LR GG   P  CC+GVRSLN AA+TT DRQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:    4 GQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.067e-27
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQV++SLAPCI +L  GG  PP  CCSGV+SLN AA+TTPDRQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   29 GQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.297e-27
Identity = 54/89 (60.67%), Postives = 72/89 (80.90%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPY+ISPST+C+ V+
Sbjct:   30 GQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.180e-26
Identity = 55/89 (61.80%), Postives = 70/89 (78.65%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQVT+SLAPCI ++R+GG  PP  CC+G+R++NG ARTT DRQ ACNCLK    +I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   28 GQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.013e-26
Identity = 54/89 (60.67%), Postives = 71/89 (79.78%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQV+++LAPCIP++R GG  PP  CC+G+R++N  ARTTPDRQAACNCLK+   ++ G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    4 GQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 4.958e-25
Identity = 53/89 (59.55%), Postives = 69/89 (77.53%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQV++SLAPCI ++R GG  PP  CC+G+R++N  ARTTPDR+ ACNCLK+   +I G+ PN AA LP +CGV IPYKIS ST+C+ V+
Sbjct:    4 GQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.476e-25
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 3
Query:  132 SGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            SGQVT SLAPCI +LR +G    PP CC+G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   30 SGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 120          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.476e-25
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 3
Query:  132 SGQVTASLAPCIPFLR-TGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            SGQVT SLAPCI +LR +G    PP CC+G++SLN AA+TTP RQAAC C+K A   I GI   +A+GLP +CGV IPYKISPSTDC+ V+
Sbjct:   26 SGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSVK 116          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.197e-24
Identity = 49/88 (55.68%), Postives = 68/88 (77.27%), Query Frame = 3
Query:  138 QVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            QV+A+LAPCI ++R+GG  PP  CC+G++++NG A+TTPDRQAACNCLK    ++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   29 QVSANLAPCINYVRSGGAVPPA-CCNGIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.197e-24
Identity = 54/88 (61.36%), Postives = 64/88 (72.73%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRV 398
            GQV++++ PC+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   34 GQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
The following BLAST results are available for this feature:
BLAST of DY259710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
LTP1_MORNI4.791e-2866.29Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN1.067e-2766.29Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU5.297e-2760.67Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_MALDO1.180e-2661.80Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE2.013e-2660.67Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR4.958e-2559.55Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP2_GOSHI6.476e-2562.64Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI6.476e-2562.64Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_PYRCO4.197e-2455.68Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP2_SORBI4.197e-2461.36Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259710 ID=DY259710; Name=DY259710; organism=Citrus clementina; type=EST; length=1250bp
GGGAGAGGGAGATTTTATGTGTCTACAGTTTGTGAATTTGATTAAGTAGA
CTGATAGCTGATCCTGATCCTGATCAAGTCAAACGCTTTTCTCGGTTCGG
GCGACTGCCCCGGTGACTAATGCCATAACATAGCGGGCAGGTGACAGCCT
CCTTGGCTCCATGCATCCCTTTCCTGAGAACTGGAGGGCGTTTTCCTCCA
CCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCAC
CCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACTGAACAA
TCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGA
GTCCCAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCGAGGGTCAG
GTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGATAA
GAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTC
TCCACTTGTATGAGTTTCACTCTCATGTCATGACTGTATATCTGCTTTTT
ATGCCGTATTAAAGACGTAAACGCGATCTGAGTATTGAGTGACTAATCAT
TCCTAGTTTGTGGTATTAACAGACAACACACTAAAACAAAAAAAAAACCC
CCTCTATTCCTCGTCTGGTTCGGCTTTAAAAAAAAGCCATGCATATCCAT
TTTGTGGCTACAAAAAGGCCCCCAATCCACTCCAAAAAAATTCCTTATTA
GCCTCCCGCTTGAAGCCCCCCATACGGGGACCAATTACCTGGGCCTAACT
GGGTCCCCCCCCCCCCCGGACCAGGTCCCAAATTCCCCCGACGCCCAGAC
CAACAACAATAACGACCTCACCCAAGATCGAACAAAACCCCCTCCCTCGC
ATCTCCCGTGCCCCGCTCCACAACCCGTGACCCCTTCCTTACCCTTCCAG
AAAAAACCATCCTTCCATGCCTGGAAAAACCCTCCCCCAAACCTCCTCTG
CAAAAAGCTCATACCTCCCCGTTCCCCGCACTCTTTATCATCCTGTTTCC
CCCCCCACACCCCCCCCCCCCCCAATCCCCAGCCCCCCCAAAAACCCAAC
CTCCACCTGCCCGTCGCTCATCACGCCCGGGATACAAACTCTCCCGTTCT
TCCATCCCCCTCCGGCGCCTGCCTCTCTTCCCCAGAACCTCTCTTCCCTC
TCAACATTTTCCCCCTTTACTCTCCTCTCTTCTTTTCATTTTCAGATCAA
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