DY259712

Overview
NameDY259712
Unique NameDY259712
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1270
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259712_ssr1220 microsatellite DY259712_ssr1220:1220..1231. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY259712 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.292e-12
Identity = 47/120 (39.17%), Postives = 64/120 (53.33%), Query Frame = 3 
Query:  432 PAGQLGRYIERKSDDTAATFAFTQHKRSFQMHLPRA-IACNTQRHHAHSHGAYCHYTGGESHDLYQRLMISADNLFVAGETTSMSYPGPVLVISPKDRIGSWDRPKPVPDQMGELDPSRP 788
            PAGQL + IE+ SD+ AA FA  Q +R     LP      +      +S G+Y +   G+ HDLY+RL +  DNLF AGE TS S+PG V        + + D    V ++ GELD  +P
Sbjct:  354 PAGQLAKDIEKMSDEAAANFAVLQLQRILPDALPPVQYLVSRWGSDVNSMGSYSYDIVGKPHDLYERLRVPVDNLFFAGEATSSSFPGSVHGAYSTGLMAAEDCRMRVLERYGELDLFQP 473
[Close]
BLAST of DY259712 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.205e-12
Identity = 46/116 (39.66%), Postives = 63/116 (54.31%), Query Frame = 3 
Query:  432 PAGQLGRYIERKSDDTAATFAFTQHKRSF-QMHLPRAIACNTQRHHAHSHGAYCHYTGGESHDLYQRLMISADNLFVAGETTSMSYPGPVLVISPKDRIGSWDRPKPVPDQMGELD 776
            PAGQL R IE+KSD+ AA FAF+Q ++       P     +      +S G+Y +    + HDLY+RL +  DNLF AGE TS SYPG V        + + D    V ++ GEL+
Sbjct:  355 PAGQLARDIEKKSDEAAANFAFSQLQKILPDASSPINYLVSRWGSDINSLGSYSYDIVNKPHDLYERLRVPLDNLFFAGEATSSSYPGSVHGAYSTGVLAAEDCRMRVLERYGELE 470
The following BLAST results are available for this feature:
BLAST of DY259712 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PAO2_ARATH1.292e-1239.17Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH2.205e-1239.66Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3DH02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259712 ID=DY259712; Name=DY259712; organism=Citrus clementina; type=EST; length=1270bp
GACAAGAATACCTTCTGCCGCAGGACCACGGGCGAAAGGGGAGGAGATAA
CCTACCAAGATAGAACCCCCTTGCCACACGACTTGACACTCCATTACGCC
GCCCAGGCCCAAAGCTACCATCGCATTCCATGGGACTGCCGGCTACGAAG
CACGAAGCCCAGACAGAAGACCGCGGACGCTGTAAGGGAAGCACGCCCGC
CCCCGCGAGATAGAAGCCAACCGATCAACTCCGAACCAAGGCTCCATGAC
TGGAACGAAGCACCCACTGATGACCTTGGAGCGGGCACTCACACCAAAAC
AAGAAGGCACTGCAACAATTTCGAGAGGCGAATGAGGACCCCCACGACGG
TGGGTGCCGATACAACAGAAGCGGACACCTACTTGCCAACTCATCACAAA
GCATGAGGACAGATGTGCCCATCTCAACGAGCCAGCCGGGCAGTTGGGTA
GATACATAGAGAGAAAGTCCGATGATACAGCAGCAACCTTCGCATTCACG
CAACACAAGAGATCCTTCCAGATGCACCTTCCCCGAGCCATAGCTTGCAA
CACTCAGAGGCACCACGCCCACTCGCATGGAGCATACTGCCACTATACTG
GAGGCGAATCCCATGATCTGTACCAAAGGCTGATGATATCAGCGGACAAC
CTATTCGTTGCCGGCGAAACAACGAGCATGAGCTACCCGGGGCCTGTCCT
GGTGATTTCCCCAAAGGACCGGATAGGCAGCTGGGACCGCCCAAAGCCCG
TTCCGGACCAAATGGGGGAATTGGACCCCTCCCGCCCATAAAGGGAAAAG
AAACCCCAAATTCAGCCCCCAATCGGATCCCCGCCCGGCAGGTAAAAGAA
AGGGCGTCCGTTAAATCCACAACGACCGGGAAAAAAAAAGGGTGGACAAG
ATTAAAAAACCCCGGGCATGATACCACCAAACCCCTGTTTGCCACCTATG
ACCTCGGGCTGCGCAGGTGATTGGGGAAACCCCCCCCGCATTCCCACTAA
ACAACCCCCCCCAGACAACCCCAAAAGGGGGCAAACATGCGCCCCGGGGG
CGCCAACCCCCCCACCCCGCCACCCCACCCCCACAACAACCTCATCTTCC
CCCCCCACAAAAAATTCAAAAAATACAAAACGGAAACAACTTGCGGCGAG
GCAAGAGAAGACGCCCGCCCCCCCCGCGTCGATCTGCTCATCACACATCC
TCGTTCTAATTTCCCCCCCCCCACCCACCCAAAACTCTCTTTGATCGCTC
GGACACCACAATCATACGAA
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