DY259762

Overview
NameDY259762
Unique NameDY259762
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length861
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259762_ssr163 microsatellite DY259762_ssr163:163..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1301 contig Ccv1_Contig1301:1..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11A_MOUSE (Signal peptidase complex catalytic subunit SEC11A OS=Mus musculus GN=Sec11a PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.847e-51
Identity = 100/169 (59.17%), Postives = 131/169 (77.51%), Query Frame = 2
Query:   38 IESIKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLV 541
            ++ ++ +  RQ+  Q +  GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+QD G ++ LTKGDNN  DDR LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY ++  L L V
Sbjct:    7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFV 174          
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11C_PONAB (Signal peptidase complex catalytic subunit SEC11C OS=Pongo abelii GN=SEC11C PE=2 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 1.525e-50
Identity = 102/172 (59.30%), Postives = 130/172 (75.58%), Query Frame = 2
Query:   47 IKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLVSTPNDS 559
            +K +  RQ+  Q +   MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LFL +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +   V    +S
Sbjct:   22 LKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRES 192          
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11C_HUMAN (Signal peptidase complex catalytic subunit SEC11C OS=Homo sapiens GN=SEC11C PE=1 SV=3)

HSP 1 Score: 199.904 bits (507), Expect = 1.525e-50
Identity = 102/172 (59.30%), Postives = 130/172 (75.58%), Query Frame = 2
Query:   47 IKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLVSTPNDS 559
            +K +  RQ+  Q +   MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LFL +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +   V    +S
Sbjct:   22 LKKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRES 192          
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11C_RAT (Signal peptidase complex catalytic subunit SEC11C OS=Rattus norvegicus GN=Sec11c PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 2.602e-50
Identity = 101/172 (58.72%), Postives = 130/172 (75.58%), Query Frame = 2
Query:   47 IKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLVSTPNDS 559
            ++ +  RQ+  Q +   MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LFL +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +   V    +S
Sbjct:   22 LRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALVAVMGAYVLLKRES 192          
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11A_RAT (Signal peptidase complex catalytic subunit SEC11A OS=Rattus norvegicus GN=Sec11a PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.602e-50
Identity = 99/169 (58.58%), Postives = 130/169 (76.92%), Query Frame = 2
Query:   38 IESIKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLV 541
            ++ ++ +  RQ+  Q +  GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+QD G ++ LTKGDNN  DDR LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P   Y ++  L L V
Sbjct:    7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMLITGSESPIVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQD-GHIKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFSYAVLFLLGLFV 174          
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11A_PONAB (Signal peptidase complex catalytic subunit SEC11A OS=Pongo abelii GN=SEC11A PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.602e-50
Identity = 99/169 (58.58%), Postives = 131/169 (77.51%), Query Frame = 2
Query:   38 IESIKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLV 541
            ++ ++ +  RQ+  Q +  GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY ++  L L V
Sbjct:    7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFV 174          
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11A_HUMAN (Signal peptidase complex catalytic subunit SEC11A OS=Homo sapiens GN=SEC11A PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.602e-50
Identity = 99/169 (58.58%), Postives = 131/169 (77.51%), Query Frame = 2
Query:   38 IESIKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLV 541
            ++ ++ +  RQ+  Q +  GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY ++  L L V
Sbjct:    7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFV 174          
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11A_CANFA (Signal peptidase complex catalytic subunit SEC11A OS=Canis familiaris GN=SEC11A PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.602e-50
Identity = 99/169 (58.58%), Postives = 131/169 (77.51%), Query Frame = 2
Query:   38 IESIKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLV 541
            ++ ++ +  RQ+  Q +  GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY ++  L L V
Sbjct:    7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFV 174          
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11A_BOVIN (Signal peptidase complex catalytic subunit SEC11A OS=Bos taurus GN=SEC11A PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.602e-50
Identity = 99/169 (58.58%), Postives = 131/169 (77.51%), Query Frame = 2
Query:   38 IESIKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLV 541
            ++ ++ +  RQ+  Q +  GMIV+SAL+IWK LM ITGSESP+VVVLSGSMEP F RGD+LFL +  +DPIR GEIVVF ++GREIPIVHRV+K+HE+Q+ G ++ LTKGDNN  DDR LY QGQ WL+++ ++GRA GF+PY+G VTI+M + P  KY ++  L L V
Sbjct:    7 LDDVRRMNKRQLYYQVLNFGMIVSSALMIWKGLMVITGSESPIVVVLSGSMEPAFHRGDLLFLTNRVEDPIRVGEIVVFRIEGREIPIVHRVLKIHEKQN-GHIKFLTKGDNNAVDDRGLYKQGQHWLEKKDVVGRARGFVPYIGIVTILMNDYPKFKYAVLFLLGLFV 174          
BLAST of DY259762 vs. ExPASy Swiss-Prot
Match: SC11C_MOUSE (Signal peptidase complex catalytic subunit SEC11C OS=Mus musculus GN=Sec11c PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 3.398e-50
Identity = 101/172 (58.72%), Postives = 130/172 (75.58%), Query Frame = 2
Query:   47 IKSLQIRQVLTQGVCLGMIVTSALIIWKALMCITGSESPVVVVLSGSMEPGFKRGDILFL-HMSKDPIRAGEIVVFNVDGREIPIVHRVIKVHERQDTGEVEVLTKGDNNYGDDRLLYAQGQLWLKRQHIMGRAVGFLPYVGWVTIIMTEKPTIKYILIPALALLVSTPNDS 559
            ++ +  RQ+  Q +   MIV+SAL+IWK L+ +TGSESP+VVVLSGSMEP F RGD+LFL +  +DPIRAGEIVVF V+GR+IPIVHRVIKVHE+ D G+++ LTKGDNN  DDR LY +GQ WL+++ ++GRA GFLPYVG VTIIM + P  KY L+  +   V    +S
Sbjct:   22 LRKMNKRQLYYQVLNFAMIVSSALMIWKGLIVLTGSESPIVVVLSGSMEPAFHRGDLLFLTNFREDPIRAGEIVVFKVEGRDIPIVHRVIKVHEK-DNGDIKFLTKGDNNEVDDRGLYKEGQNWLEKKDVVGRARGFLPYVGMVTIIMNDYPKFKYALLAVMGAYVLLKRES 192          
The following BLAST results are available for this feature:
BLAST of DY259762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SC11A_MOUSE6.847e-5159.17Signal peptidase complex catalytic subunit SEC11A ... [more]
SC11C_PONAB1.525e-5059.30Signal peptidase complex catalytic subunit SEC11C ... [more]
SC11C_HUMAN1.525e-5059.30Signal peptidase complex catalytic subunit SEC11C ... [more]
SC11C_RAT2.602e-5058.72Signal peptidase complex catalytic subunit SEC11C ... [more]
SC11A_RAT2.602e-5058.58Signal peptidase complex catalytic subunit SEC11A ... [more]
SC11A_PONAB2.602e-5058.58Signal peptidase complex catalytic subunit SEC11A ... [more]
SC11A_HUMAN2.602e-5058.58Signal peptidase complex catalytic subunit SEC11A ... [more]
SC11A_CANFA2.602e-5058.58Signal peptidase complex catalytic subunit SEC11A ... [more]
SC11A_BOVIN2.602e-5058.58Signal peptidase complex catalytic subunit SEC11A ... [more]
SC11C_MOUSE3.398e-5058.72Signal peptidase complex catalytic subunit SEC11C ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YB23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259762 ID=DY259762; Name=DY259762; organism=Citrus clementina; type=EST; length=861bp
GAGAAGAGAAACCCTTTTGGGGTGGATCGGGGAAAGCATAGAGTCGATCA
AGTCCCTTCAGATCCGCCAGGTCCTTACTCAGGGCGTCTGTCTTGGTATG
ATTGTTACATCTGCTTTAATAATATGGAAGGCATTGATGTGCATCACTGG
CAGTGAATCTCCTGTTGTTGTTGTTCTTTCTGGAAGCATGGAACCTGGCT
TCAAGAGGGGAGATATTTTGTTCTTGCATATGAGTAAAGATCCTATTCGT
GCTGGAGAGATTGTTGTTTTTAATGTTGATGGCCGGGAAATTCCAATTGT
CCATCGAGTTATTAAGGTTCACGAACGGCAAGATACTGGGGAAGTTGAGG
TCCTAACAAAAGGAGATAACAATTATGGGGATGATAGGCTTTTGTATGCT
CAAGGTCAGCTCTGGCTTAAGCGACAACATATTATGGGCAGAGCTGTGGG
GTTCTTACCTTATGTCGGCTGGGTGACCATTATCATGACCGAAAAGCCTA
CAATCAAGTATATCCTTATCCCGGCACTGGCACTGCTTGTTTCTACTCCC
AACGATTCATAGATGAAAGTTTCAGGACTTCCTTTCCCTTGCAGCAAATG
CCCTCAGGGTCCCTTAATTTTGTGTTTTCTTTCCACTTCCTTTCCATAAT
ACAGCACCCTTGTACCTGATTGTCCATTCTCAACATGATTTACAATATTC
TGTCGAACTCTTCCTTCTCTAAGCCCCCACTCAACCACGCTCACTCCCCT
CCCCCACAAAAGATCACCCAAAACTCCCCCCCACTTGCTCTACGCGTGCC
TTTAGATCCACTACCTCCCCCCCTCTTCTTCCATACATTTCTCTCTCCTC
CCTCCTCCCCT
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