DY259764

Overview
NameDY259764
Unique NameDY259764
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1078
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1302 contig Ccv1_Contig1302:1..1078. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259764 vs. ExPASy Swiss-Prot
Match: ATL4M_ARATH (RING-H2 finger protein ATL4M OS=Arabidopsis thaliana GN=ATL4M PE=2 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 1.377e-81
Identity = 157/219 (71.69%), Postives = 176/219 (80.37%), Query Frame = 2
Query:   74 MSSLSLCGNFFERVKEFCNFAVSAVIGNIFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERASCSVCLQDFQLGETARSXXXXXXXXXXXXXDKWLPGHPSLPI 730
            +SS     NF ER+K+ C F +SAV+G I SA+ TFFFALVGTLLGA+TGALIGQETESGF+RGAAVGAISGAVFSIEVFESSLVLW+S+ES  GCLLYLIDVI SL+SGRLVRERIGPAMLSAVQSQMGAV+ +F+E  +IFDTG SKGLTG+ VDKIPKI IT KNN+DASG + SCSVCLQDFQLGET RS             D WL  H S P+
Sbjct:   13 ISSCPSLENFIERIKDACRFTLSAVLGTILSAVLTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIGPAMLSAVQSQMGAVDSTFEELSSIFDTGGSKGLTGDLVDKIPKIKITGKNNLDASGNKDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLFRHGSCPM 231          
BLAST of DY259764 vs. ExPASy Swiss-Prot
Match: ATL2B_ARATH (RING-H2 finger protein ATL2B OS=Arabidopsis thaliana GN=ATL2B PE=2 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 3.067e-81
Identity = 156/221 (70.59%), Postives = 175/221 (79.19%), Query Frame = 2
Query:   68 FSMSSLSLCGNFFERVKEFCNFAVSAVIGNIFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERASCSVCLQDFQLGETARSXXXXXXXXXXXXXDKWLPGHPSLPI 730
            + +SS    GNF ER+K+ C+F VSAV+G I SAI TFFFALVGTLLGA+TGALIGQETESGF+RGAA+GAISGAVFSIEVFESSL LW+SDESG GC LYLIDVI SLLSGRLVRERIGPAMLSAVQSQMGAV+ +FD+  ++FDTG SKGLTG+ V+KIPK+TIT  NN DAS    SCSVCLQDFQLGET RS             D WL  H S P+
Sbjct:   16 YPLSSSPSLGNFVERIKDACHFLVSAVLGTIISAILTFFFALVGTLLGALTGALIGQETESGFIRGAAIGAISGAVFSIEVFESSLDLWKSDESGFGCFLYLIDVIVSLLSGRLVRERIGPAMLSAVQSQMGAVDTAFDDHTSLFDTGGSKGLTGDLVEKIPKMTITGNNNTDASENTDSCSVCLQDFQLGETVRSLPHCHHMFHLPCIDNWLLRHGSCPM 236          
BLAST of DY259764 vs. ExPASy Swiss-Prot
Match: ATL5P_ARATH (RING-H2 finger protein ATL5P OS=Arabidopsis thaliana GN=ATL5P PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 2.058e-77
Identity = 153/221 (69.23%), Postives = 177/221 (80.09%), Query Frame = 2
Query:   68 FSMSSLSLCGNFFERVKEFCNFAVSAVIGNIFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERASCSVCLQDFQLGETARSXXXXXXXXXXXXXDKWLPGHPSLPI 730
            +S+S +S+      R+K+  +FAVSA++ N+FSA+FTFFFALVGTLLGA+TGALIGQETESGF+RGAAVGAISGAVFSIEVFESSL+LWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVE  F +  +IFDT +SKGLTG+S+++IPK+ IT     D S E  SCSVCLQDFQ+GET RS             DKWL  H S P+
Sbjct:    5 YSLSPISV----LHRIKDSFHFAVSALLANLFSALFTFFFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVESQFQDHTDIFDTAISKGLTGDSLNRIPKVRIT-----DTSPEIVSCSVCLQDFQVGETVRSLPHCHHMFHLPCIDKWLRRHASCPL 216          
BLAST of DY259764 vs. ExPASy Swiss-Prot
Match: ATL1Q_ARATH (RING-H2 finger protein ATL1Q OS=Arabidopsis thaliana GN=ATL1Q PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 2.550e-27
Identity = 68/208 (32.69%), Postives = 113/208 (54.33%), Query Frame = 2
Query:  107 ERVKEFCNFAVSAVIGNIFSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVEVSFDEAPNIFDTGLSKGLTGESVDKIPKITITDKNNIDASGERASCSVCLQDFQLGETARSXXXXXXXXXXXXXDKWLPGHPSLPI 730
            E++ +     VS +I  +FS   T  FA+ G   GA+TGA+ G+  + G +RGAA+GA++GA+ S+EV E+S   W  + SG      + D +  L  GRLV E++   M+++   Q+   +VS++E  +++    ++GL+G+S+ K+P   ++ +       +   C++CLQD + GE  RS             DKWL  H S PI
Sbjct:   12 EQIADSTIDTVSRLIAGVFSGALTGIFAMAGAFTGAVTGAVAGRAAQYGVLRGAALGAVAGAILSVEVLEASRAYWYLELSGSRGPSSMADFVEQLFRGRLVDEQLMSTMINSHHWQLRISDVSYEEREDVYGELEARGLSGDSLRKLPCYIMSSEM---VRRQVTHCTICLQDIKTGEITRSLPKCDHTFHLVCVDKWLIRHGSCPI 216          
The following BLAST results are available for this feature:
BLAST of DY259764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ATL4M_ARATH1.377e-8171.69RING-H2 finger protein ATL4M OS=Arabidopsis thalia... [more]
ATL2B_ARATH3.067e-8170.59RING-H2 finger protein ATL2B OS=Arabidopsis thalia... [more]
ATL5P_ARATH2.058e-7769.23RING-H2 finger protein ATL5P OS=Arabidopsis thalia... [more]
ATL1Q_ARATH2.550e-2732.69RING-H2 finger protein ATL1Q OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YC04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259764 ID=DY259764; Name=DY259764; organism=Citrus clementina; type=EST; length=1078bp
TTCAATTGTTACAAATCTTTGCTTTGGACCAAAAGAAATAATGGAGTTTT
ATGCATACCCTTCTCGTTTTTCTATGTCGTCGTTGTCTTTGTGTGGCAAT
TTCTTTGAAAGGGTTAAAGAATTCTGCAATTTTGCGGTTTCTGCTGTTAT
TGGGAACATCTTCTCTGCGATCTTCACTTTCTTCTTCGCATTAGTGGGCA
CGTTGTTGGGAGCCATGACTGGAGCTTTAATAGGACAGGAAACTGAGAGT
GGGTTTGTTCGAGGGGCTGCAGTTGGGGCAATATCTGGAGCTGTGTTTTC
GATTGAAGTATTTGAATCTTCCCTTGTTCTTTGGCAATCAGATGAGTCTG
GGATCGGGTGTCTCCTGTATTTGATCGATGTTATTGCCAGCCTTCTAAGT
GGGAGACTTGTGCGTGAGCGAATTGGTCCAGCCATGCTCAGTGCTGTGCA
GAGTCAGATGGGAGCTGTTGAAGTAAGCTTCGATGAGGCACCCAACATCT
TTGACACTGGCCTTTCAAAAGGTTTAACAGGAGAATCAGTCGATAAGATC
CCAAAGATAACAATTACTGACAAGAACAACATAGATGCTTCTGGAGAGAG
AGCTTCTTGTTCAGTGTGCCTTCAGGACTTTCAGCTTGGTGAAACAGCTA
GAAGTTTGCCTCCTTGCCCTCCACTGTTTCCCATACCTTGCATAGATAAG
TGGCTCCCTGGGCACCCTTCTTTGCCCATTATGTCGGAAGGAACCGGAAT
GTGGTGCATTTTTCCTTTCCCGGAAAATAACTTTACCCCAAATTTCTTTT
TTACCTTTTTAAAACCCTCCTTACCTTTAAAATGTTTTGTATTTTGTTCC
ATAAAATATGGTACCCCCCCCCCTTTCCGGGGGTGGTGGGGCGCCTTGTC
CCCCTACGGGGCACAAGTAATTTGAACGACCCAATTGAAAAACATTTCCA
AATTAACCCGGGCCCCTCCCTCTCCTCAAAACCAAAAACTCAAAAATACA
CCCCTCCTTTCCTGGTCCAAAATCGCGGCCTCAGAAACAAAACCCTTCCT
CCCCACCTGTTGCTCCCCCCACCCACCG
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