DY259767

Overview
NameDY259767
Unique NameDY259767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1016
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259767_ssr829 microsatellite DY259767_ssr829:829..840. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY259767 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.846e-22
Identity = 60/169 (35.50%), Postives = 95/169 (56.21%), Query Frame = 3
Query:   27 AVASNSLLVWGTSPIPEPHRDVNGNEVQSTLKYKIITSIWGAGGGGINLHDGKNG**PQDVIQLPSEMPNGNQITLTPYNNST-TVP*STDLNLRFSMLLSGRD-YCNEQPLWKVDNYDAASRK*FITTGGLDGHPGPKTLLKWFKLDKSGNFPGTYEINHCPSDCKSC 527
            A  S S      +    P  D +G+E+Q+ ++Y +++SI GAGGGG+ L        P+ V+Q  S++ NG  +  +  ++    V  STD+N+ F  +   RD  C+   +W++DNYD ++ K ++TT G+ G PGP TL  WFK++K+G     Y+   CPS C SC
Sbjct:   13 AFTSKSYFFGVANAANSPVLDTDGDELQTGVQYYVLSSISGAGGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPI---RDRLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGVL--GYKFRFCPSVCDSC 176          
BLAST of DY259767 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 3.154e-16
Identity = 56/171 (32.75%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   24 LAVASNSLLVWGTSPIPEPHRDVNGNEVQSTLKYKIITSIWGAGGGGINLHDGKNG**--PQDVIQLPSEMPNGNQITLTPYN-NSTTVP*STDLNLRFSMLLSGRDYCNEQPLWKVDNYDAASRK*FITTGGLDGHPGPKTLLKWFKLDKSGNFPGTYEINHCPSDCKSC 527
            LA A+N LL    S  P P  D++G ++++   Y I+  +   GGG        NG    P  V+Q   E+ +   +   P N     V  STDLN+ FS  +  R       +W++D YD ++ + F+T GG+ G+PGP+T+  WFK+++     G Y++  CP+ C SC
Sbjct:   18 LAAAANPLLSAADSA-PNPVLDIDGEKLRTGTNYYIVPVLRDHGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCR--WTSSTVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCG-SGFYKLVFCPTVCGSC 184          
BLAST of DY259767 vs. ExPASy Swiss-Prot
Match: LSPI_CARPA (Latex serine proteinase inhibitor OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.264e-13
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 3
Query:   72 PEPHRDVNGNEVQSTLKYKIITSIWGAGGGGINLH-DGKNG**PQDVIQLPSEMPNGNQITLTPYNN--STTVP*STDLNLRFSMLLSGRDYCNEQPLWKVDNYDAASRK*FITTGGLDGHPGPKTLLKWFKLDKSGNFPGTYEINHCPS 512
            P+P  D++G  V   + Y ++++IWGAGGGG+ ++  G     P  V+Q P +  NG  I  +   N     V  S DLN++F++ ++    CNE   WKVD +        +T GG  G+ G ++    FK+ K+G  P +Y+ + CPS
Sbjct:    3 PKPIVDIDGKPVLYGVDYFVVSAIWGAGGGGLTVYGPGNKKKCPLSVVQDPFD--NGEPIIFSAIKNVKDNIVFESVDLNVKFNITIN----CNETTAWKVDRFPGVIGW-TVTLGGEKGYHGFESTHSMFKIKKAG-LPFSYKFHFCPS 144          
The following BLAST results are available for this feature:
BLAST of DY259767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ASP_THECC3.846e-2235.5021 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
MIRA_RICDU3.154e-1632.75Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
LSPI_CARPA3.264e-1333.33Latex serine proteinase inhibitor OS=Carica papaya... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YC07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259767 ID=DY259767; Name=DY259767; organism=Citrus clementina; type=EST; length=1016bp
GAACAACACTCTCTTTCCATAACCTTGCGGTGGCCTCTAACTCTTTGTTG
GTCTGGGGCACCTCACCAATTCCTGAACCTCACCGTGATGTCAACGGCAA
CGAGGTACAATCCACCCTTAAATACAAAATAATCACATCCATCTGGGGAG
CTGGCGGTGGTGGAATTAACCTACACGATGGAAAAAACGGATAATGACCG
CAGGACGTAATCCAATTACCATCAGAAATGCCAAATGGAAACCAAATAAC
ACTGACACCGTATAACAATTCTACTACTGTCCCATAATCCACTGATCTCA
ACTTGAGATTCTCAATGTTGCTATCTGGACGTGACTATTGTAACGAACAA
CCATTGTGGAAAGTTGATAATTATGACGCAGCATCACGCAAATAGTTTAT
AACAACCGGGGGACTCGATGGTCATCCAGGACCTAAAACCTTGCTAAAGT
GGTTTAAGCTCGACAAAAGTGGAAATTTTCCCGGTACATACGAAATCAAT
CACTGTCCCTCAGATTGCAAGTCTTGTGTCATACAACGGCAACAACGTGG
GCAGATCGTTAGATGATGGCATACGAAATCTGGTTCTGAATCTTCATGAC
AAAGCAGAATTACCTCGTTAACATAAGGTCACTCAACAAAAACATCAATT
TCCAGTAAAAAAAAAATTAAACTACCAAACCACTGAAAAGATAAACTAAA
AATAACGAAAAAAGACAACTCACCCTTCAGCCACAAAAAGACAAAATAAA
TAATAGGAATCCCGAAGAATCACGACAGAAAATAAAAAAAGAGCCCTAAG
GAACAAATATTTAAAAGAAGATAACCAAAAATAAATAAATATAACCAATA
AAAATAAAACATAACAACCACACAAATATTACTACCTATCTTTCTAATAA
ATAAACTATACTCTTTAATTTACATCACAAACCTATCTTACCCCAATAAC
TCAATAAAAGTTAATATATTAATCAAACTTCTTTATATGTGTTAAATATT
AAATTATTACACTTAC
back to top