DY259772
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 8.353e-29 Identity = 69/141 (48.94%), Postives = 96/141 (68.09%), Query Frame = 2 Query: 389 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDK--RNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805 +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT K +KEP S CL+RLPSG EKL D++C+ATIG VSNPNHGA+ L+K G + W G + + + NP + G G+ + +G GR + P GKP Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNP-----VDHPHGGGEGRTKG--GRPSVSPWGKP 486
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2) HSP 1 Score: 128.257 bits (321), Expect = 8.353e-29 Identity = 69/141 (48.94%), Postives = 96/141 (68.09%), Query Frame = 2 Query: 389 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDK--RNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805 +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT K +KEP S CL+RLPSG EKL D++C+ATIG VSNPNHGA+ L+K G + W G + + + NP + G G+ + +G GR + P GKP Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNP-----VDHPHGGGEGRTKG--GRPSVSPWGKP 486
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 8.353e-29 Identity = 69/141 (48.94%), Postives = 96/141 (68.09%), Query Frame = 2 Query: 389 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDK--RNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805 +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT K +KEP S CL+RLPSG EKL D++C+ATIG VSNPNHGA+ L+K G + W G + + + NP + G G+ + +G GR + P GKP Sbjct: 354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNP-----VDHPHGGGEGRTKG--GRPSVSPWGKP 486
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2) HSP 1 Score: 106.686 bits (265), Expect = 2.603e-22 Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = 2 Query: 407 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNL-KEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDK--RNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805 +G+C+PLA + IGT +HNIE NPGQG KL RAAGT + + K + C++RLPSG +KL D++C+ATIG VSN NHG + K G + W G + + + NP + G G+ + +G GR + P GKP Sbjct: 359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNP-----VDHPHGGGEGRTKG--GRPSVSPWGKP 487
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_MESSB (50S ribosomal protein L2 OS=Mesorhizobium sp. (strain BNC1) GN=rplB PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 6.000e-19 Identity = 60/165 (36.36%), Postives = 88/165 (53.33%), Query Frame = 2 Query: 341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLRS 835 P++ D+++ VD+ G+ MPLA M +GTI+HN+E+ PG+GG++ R+AG S L +LRL SG+++L C AT+G VSNP+H +L K G W G + N + + G G+ + G GR + P GKP T G K RS Sbjct: 107 PQRLAAGDRVISSAQSVDVKP--GNAMPLAAMPVGTIVHNVELKPGKGGQIARSAG-SYAQLVGRDQGMAILRLNSGEQRLVSGTCMATVGAVSNPDHANVSLGKAGRKRWLGKR---PHNRGVTMNPVDHPHGGGEGRTSG--GRHPVSPWGKP--TKGRKTRS 261
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICRS (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplB PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18 Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2 Query: 341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679 P+K +V D+++ D + +IG+C+PL C+ IGT +HN+E+ G+GG++ R+AGTS +L S + ++L SG+ +L C+ATIG++SNP+ NL K G N W G Sbjct: 107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICRO (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Iowa) GN=rplB PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18 Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2 Query: 341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679 P+K +V D+++ D + +IG+C+PL C+ IGT +HN+E+ G+GG++ R+AGTS +L S + ++L SG+ +L C+ATIG++SNP+ NL K G N W G Sbjct: 107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICPU (50S ribosomal protein L2 OS=Rickettsia peacockii (strain Rustic) GN=rplB PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18 Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2 Query: 341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679 P+K +V D+++ D + +IG+C+PL C+ IGT +HN+E+ G+GG++ R+AGTS +L S + ++L SG+ +L C+ATIG++SNP+ NL K G N W G Sbjct: 107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18 Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2 Query: 341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679 P+K +V D+++ D + +IG+C+PL C+ IGT +HN+E+ G+GG++ R+AGTS +L S + ++L SG+ +L C+ATIG++SNP+ NL K G N W G Sbjct: 107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18 Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2 Query: 341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679 P+K +V D+++ D + +IG+C+PL C+ IGT +HN+E+ G+GG++ R+AGTS +L S + ++L SG+ +L C+ATIG++SNP+ NL K G N W G Sbjct: 107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215 The following BLAST results are available for this feature:
BLAST of DY259772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259772 ID=DY259772; Name=DY259772; organism=Citrus clementina; type=EST; length=1125bpback to top |