DY259772

Overview
NameDY259772
Unique NameDY259772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1125
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RM02_ORYSJ (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. japonica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 8.353e-29
Identity = 69/141 (48.94%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  389 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDK--RNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT  K +KEP S  CL+RLPSG EKL D++C+ATIG VSNPNHGA+ L+K G + W G + + +    NP     +    G G+ + +G  GR  + P GKP
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNP-----VDHPHGGGEGRTKG--GRPSVSPWGKP 486          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RM02_ORYSI (60S ribosomal protein L2, mitochondrial OS=Oryza sativa subsp. indica GN=RPL2 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 8.353e-29
Identity = 69/141 (48.94%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  389 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDK--RNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT  K +KEP S  CL+RLPSG EKL D++C+ATIG VSNPNHGA+ L+K G + W G + + +    NP     +    G G+ + +G  GR  + P GKP
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNP-----VDHPHGGGEGRTKG--GRPSVSPWGKP 486          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RM02_ORYSA (60S ribosomal protein L2, mitochondrial OS=Oryza sativa GN=RPL2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.353e-29
Identity = 69/141 (48.94%), Postives = 96/141 (68.09%), Query Frame = 2
Query:  389 VDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDK--RNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805
            +D+NS++G+ +PLA +R+GT +H+IE +PGQG KL RAAGT  K +KEP S  CL+RLPSG EKL D++C+ATIG VSNPNHGA+ L+K G + W G + + +    NP     +    G G+ + +G  GR  + P GKP
Sbjct:  354 LDLNSKVGNSIPLADIRMGTWVHDIECHPGQGAKLARAAGTYAKIIKEPASQ-CLVRLPSGVEKLIDSRCRATIGIVSNPNHGARKLRKAGQSRWSGRRPIVRGVAMNP-----VDHPHGGGEGRTKG--GRPSVSPWGKP 486          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RM02_MARPO (60S ribosomal protein L2, mitochondrial OS=Marchantia polymorpha GN=RPL2 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.603e-22
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = 2
Query:  407 IGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNL-KEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDK--RNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805
            +G+C+PLA + IGT +HNIE NPGQG KL RAAGT  + + K   +  C++RLPSG +KL D++C+ATIG VSN NHG +   K G + W G + + +    NP     +    G G+ + +G  GR  + P GKP
Sbjct:  359 VGNCIPLAKIPIGTWVHNIERNPGQGAKLTRAAGTFAQIIQKVENTPQCIVRLPSGVDKLIDSRCRATIGIVSNLNHGKRKFNKAGQSRWLGRRPIVRGVAMNP-----VDHPHGGGEGRTKG--GRPSVSPWGKP 487          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_MESSB (50S ribosomal protein L2 OS=Mesorhizobium sp. (strain BNC1) GN=rplB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.000e-19
Identity = 60/165 (36.36%), Postives = 88/165 (53.33%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLRS 835
            P++    D+++     VD+    G+ MPLA M +GTI+HN+E+ PG+GG++ R+AG S   L        +LRL SG+++L    C AT+G VSNP+H   +L K G   W G +     N   +   +    G G+ +  G  GR  + P GKP  T G K RS
Sbjct:  107 PQRLAAGDRVISSAQSVDVKP--GNAMPLAAMPVGTIVHNVELKPGKGGQIARSAG-SYAQLVGRDQGMAILRLNSGEQRLVSGTCMATVGAVSNPDHANVSLGKAGRKRWLGKR---PHNRGVTMNPVDHPHGGGEGRTSG--GRHPVSPWGKP--TKGRKTRS 261          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICRS (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  +L    S +  ++L SG+ +L    C+ATIG++SNP+    NL K G N W G
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICRO (50S ribosomal protein L2 OS=Rickettsia rickettsii (strain Iowa) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  +L    S +  ++L SG+ +L    C+ATIG++SNP+    NL K G N W G
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICPU (50S ribosomal protein L2 OS=Rickettsia peacockii (strain Rustic) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  +L    S +  ++L SG+ +L    C+ATIG++SNP+    NL K G N W G
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICCN (50S ribosomal protein L2 OS=Rickettsia conorii GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  +L    S +  ++L SG+ +L    C+ATIG++SNP+    NL K G N W G
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICAE (50S ribosomal protein L2 OS=Rickettsia africae (strain ESF-5) GN=rplB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 6.634e-18
Identity = 46/113 (40.71%), Postives = 73/113 (64.60%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            P+K +V D+++      D + +IG+C+PL C+ IGT +HN+E+  G+GG++ R+AGTS  +L    S +  ++L SG+ +L    C+ATIG++SNP+    NL K G N W G
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKCIPIGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215          
The following BLAST results are available for this feature:
BLAST of DY259772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RM02_ORYSJ8.353e-2948.9460S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSI8.353e-2948.9460S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_ORYSA8.353e-2948.9460S ribosomal protein L2, mitochondrial OS=Oryza s... [more]
RM02_MARPO2.603e-2244.1260S ribosomal protein L2, mitochondrial OS=Marchan... [more]
RL2_MESSB6.000e-1936.3650S ribosomal protein L2 OS=Mesorhizobium sp. (str... [more]
RL2_RICRS6.634e-1840.7150S ribosomal protein L2 OS=Rickettsia rickettsii ... [more]
RL2_RICRO6.634e-1840.7150S ribosomal protein L2 OS=Rickettsia rickettsii ... [more]
RL2_RICPU6.634e-1840.7150S ribosomal protein L2 OS=Rickettsia peacockii (... [more]
RL2_RICCN6.634e-1840.7150S ribosomal protein L2 OS=Rickettsia conorii GN=... [more]
RL2_RICAE6.634e-1840.7150S ribosomal protein L2 OS=Rickettsia africae (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259772 ID=DY259772; Name=DY259772; organism=Citrus clementina; type=EST; length=1125bp
CTCACTCAGAAAAACTTTCACGGTGGCTGTCACCTTTCTGCTCAGTGTAT
TCACCCATCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTAGGGTGCTT
TAGCTTCTGTCACCGCCGGTAACATGTTGTGATAGACAGTGAAATCAGCA
GAAGAAAACAAAACGGAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAA
TGGCTTTGTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTT
CTCTGTCCTTTCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTC
TGAAACCGAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAG
AAACTGTGCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAAT
TCTCAAATTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCAT
CATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAG
CTGCGGGGACGTCAACCAAGAATTTGAAAGAACCCACTTCAAGCTTCTGT
TTATTAAGACTACCTTCTGGTAAAGAAAAACTGAATGACACTAAATGTCA
AGCCACCATTGGTACAGTGTCTAACCCCAACCATGGAGCTAAAAACCTTA
AGAAAGGCGGTCCAAACCCTTGGTTTGGTCCAAAAACCGTGGATAAAAGA
AATAACCCAAAATCCAGTTGAACCATCCTCAGGGGGAAGGGGAGGGGACA
AAACCAAATTAGGGGTTACACGGGACGGGGTTTCATTTAACCCTGAGGGA
AACCTTTGCAAACTTGGGGAATAAAACTCCGTTCCCCAAAAAAAAAAAAA
AAAAATACCCCTCCTAAAAATCACTTCACCTTTTCCAGCCCAGATCACCT
ATTCTCACAAACATACACCACATATTACCTTCTTTCCAAACCAGACGATT
CTACCCACATTTCAAGAATACCAATAAATTTATACTTCCATCTATCTTCC
CCTCCACTCTGCCACTCATTCTTACAATCAATACATAAATAAAACAACAA
CCCCCCCCGCATCTCCCACGAACTATCTCGTTAATCCTCAAAAACAACAG
TCGTACAATCAACACTACAAACAGA
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