DY259773

Overview
NameDY259773
Unique NameDY259773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.220e-47
Identity = 106/237 (44.73%), Postives = 147/237 (62.03%), Query Frame = 1
Query:  295 SYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLKDWFSKKKAIQPHGGPTRGKKPNLPGFIFKFPPQK 1005
            ++ D ++ +++                TSLGPKGMDKMI T  GEVI+TNDGATIL  + VL PAAKMLV+LS +QD  AGDGTT+VV++AG++L     LL  GIHPTVI+++  +AA   VD +   A+ +ELSDR+SL+++A+TSLNSK+VSQYS L   +       +  P+       K  R +KKLG  I DT+L+      + A++  GGPTR +K N+    F+  P K
Sbjct:   10 AFQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVATNVDLKDIRIVKKLGGIIDDTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPK 246          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 6.054e-47
Identity = 112/243 (46.09%), Postives = 147/243 (60.49%), Query Frame = 1
Query:  244 MASPAVVPSQPRSSKTESYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLKDWFSKKKAIQPHGGPTRGKKPNL 972
            +  PA    +P+    ++Y D  +  DI                TSLGP+GMDKMI  A+GEV ITNDGATIL +M V+ PAAKMLVELS++QD  AGDGTT+VVV+AGALLK    LL  GIHPT ISD   K +  AVD+LT M+ P+EL+DR+SLVKSASTSLNSKVVSQ+S+    +       +           K  + ++ LG TI DT+L+      +++   + GP R +K  +
Sbjct:    2 VVKPAARGMKPQG---QAYKDKSKPADIRQSNINAAKAVSDAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEMSTPIELTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKVTEAGHESGVDLKNVKIIRSLGGTIDDTELVDGLVFTQRSCGVN-GPKRVEKAKI 240          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 184.882 bits (468), Expect = 6.693e-46
Identity = 103/199 (51.76%), Postives = 136/199 (68.34%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLKDWFSKKKAIQPHGGPTRGKKPNL 972
            TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ PVELSDR++L+ SA+TSLNSKVVSQYS+L   ++      +  P        +  + +KKLG TI D +L++     +K    + G TR +K  +
Sbjct:   50 TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKV--SNSGITRVEKAKI 246          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 8.742e-46
Identity = 107/233 (45.92%), Postives = 143/233 (61.37%), Query Frame = 1
Query:  274 PRSSKTESYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLKDWFSKKKAIQPHGGPTRGKKPNL 972
            P S    +Y D  +   I                TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ PV+LSDR++L+ SA+TSLNSKVVSQYS+L   ++      +  P        +  + +KKLG TI D +L++     +K    + G TR +K  +
Sbjct:   16 PGSRGKSAYQDRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKV--ANSGITRVEKAKI 246          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.947e-45
Identity = 102/199 (51.26%), Postives = 135/199 (67.84%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLKDWFSKKKAIQPHGGPTRGKKPNL 972
            TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ PVELSDR++L+ SA+TSLNSKV SQYS+L   ++      +  P        +  + +KKLG TI D +L++     +K    + G TR +K  +
Sbjct:   50 TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPVELSDRETLLNSATTSLNSKVASQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKV--SNSGITRVEKAKI 246          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 182.956 bits (463), Expect = 2.543e-45
Identity = 102/199 (51.26%), Postives = 136/199 (68.34%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLKDWFSKKKAIQPHGGPTRGKKPNL 972
            TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ PV+LSDR++L+ SA+TSLNSKVVSQYS+L   ++      +  P        +  + +KKLG TI D +L++     +K    + G TR +K  +
Sbjct:   50 TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDMSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKV--ANSGITRVEKAKI 246          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.543e-45
Identity = 109/238 (45.80%), Postives = 150/238 (63.03%), Query Frame = 1
Query:  244 MASPAVVPSQPRSSKTESYVDNKRKE-DIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLKDWFSKKKAIQPHGGPTR 954
            M++PA  P++   S+++   D K KE D+                TSLGPKGMDKMI + + EV+I+NDGATIL  +E+  PAAKML EL+K+QD  AGDGTT+V VIAG+LL     L++ GIHP++IS+  + A   +++VL +M+VPV L+DR SLVKSA+TSLNSKVVSQY+ L  ++       +  P        K  + +KKLG TI DT+L++     + A    GGPTR
Sbjct:    1 MSAPAAAPAKVLPSRSD--FDEKEKEKDVRTSNIVAARAVADAIRTSLGPKGMDKMIISPNNEVLISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVLVSMSVPVSLTDRVSLVKSATTSLNSKVVSQYTNL-ASIAVDAVLSVINPATAVNVNLKDIKLIKKLGGTIEDTELVQGLVFDQTASHTAGGPTR 235          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.140e-45
Identity = 105/212 (49.53%), Postives = 133/212 (62.74%), Query Frame = 1
Query:  268 SQPRSSKTESYVDNKRKEDIXXXXXXXXXXXXXXXXTSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLK 903
            S    +K  +Y D  +   I                TSLGPKGMDKMI    G+V ITNDGATIL +M+VL P+AKMLVELSK+QD  AGDGTT+VVVIAGALL  C  LL  GIHPT+IS++  KA    V+VLTAM+ PV+L DR++L+ SA+TSL SKVVSQYS+L   ++      +  P           + +KKLG TI D +L++
Sbjct:   11 SNTGKNKGGAYQDRDKPAQIRYSNISAAKAVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAMSQPVQLGDRETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRVIDPATATSVDLHDIKIIKKLGGTIDDCELVE 222          

HSP 2 Score: 22.7126 bits (47), Expect = 3.140e-45
Identity = 10/16 (62.50%), Postives = 11/16 (68.75%), Query Frame = 3
Query:  957 EKAKFAGIHFQISPPK 1004
            EKAK   I F +SPPK
Sbjct:  239 EKAKIGLIQFCLSPPK 254          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 3.322e-45
Identity = 102/199 (51.26%), Postives = 135/199 (67.84%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLKDWFSKKKAIQPHGGPTRGKKPNL 972
            TSLGPKGMDKMI    G+V ITNDGATIL +M+VL PAA+MLVELSK+QD  AGDGTT+VV+IAG+LL  C  LL  GIHPT+IS++  KA    +++LT M+ P ELSDR++L+ SA+TSLNSKVVSQYS+L   ++      +  P        +  + +KKLG TI D +L++     +K    + G TR +K  +
Sbjct:   53 TSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDMSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATATSVDLRDIKIVKKLGGTIDDCELVEGLVLTQKV--ANSGITRVEKAKI 249          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPD_YEAST (T-complex protein 1 subunit delta OS=Saccharomyces cerevisiae GN=CCT4 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.673e-44
Identity = 103/212 (48.58%), Postives = 138/212 (65.09%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTL--PGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLKDWFSKKKAIQPHGGPTRGKKPNLPGFIFKFPPQK 1005
            TSLGPKGMDKMI T+ GE+II+NDG TIL +M +L P A+MLVE+S +QD+ AGDGTT+VV++ GALL     LL+ GIHPT+I+D+   AA  +VD+L  M   V LSDR+ LV++ASTSL+SK+VSQYS+   P AV    +      K          R +KK+G TI DT+++      + AI+  GGPTR +K  +    F+  P K
Sbjct:   37 TSLGPKGMDKMIKTSRGEIIISNDGHTILKQMAILHPVARMLVEVSAAQDSEAGDGTTSVVILTGALLGAAERLLNKGIHPTIIADSFQSAAKRSVDILLEMCHKVSLSDREQLVRAASTSLSSKIVSQYSSFLAPLAVDSVLKISDENSKNV---DLNDIRLVKKVGGTIDDTEMIDGVVLTQTAIKSAGGPTRKEKAKIGLIQFQISPPK 245          
The following BLAST results are available for this feature:
BLAST of DY259773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TCPD_SCHPO1.220e-4744.73T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPD_AEDTR6.054e-4746.09T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPD_HUMAN6.693e-4651.76T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_MOUSE8.742e-4645.92T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_PONAB1.947e-4551.26T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_RAT2.543e-4551.26T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_DICDI2.543e-4545.80T-complex protein 1 subunit delta OS=Dictyostelium... [more]
TCPD_TAKRU3.140e-4549.53T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_BOVIN3.322e-4551.26T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPD_YEAST3.673e-4448.58T-complex protein 1 subunit delta OS=Saccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259773 ID=DY259773; Name=DY259773; organism=Citrus clementina; type=EST; length=1033bp
ATCAAATTGCAAAATTCTCTCCCACATAAACCCACTTCACTTTACTGTCC
GCCTTGTTCCCTCCAGAACCTCCCCTGAATCTCTGTTTCTAGGGTTTTCG
TAAATTTCATTTCCACTCTCACCCCGATCTTTCCTCTTTGTTTACACTTT
CTGCCACTCCAAAACTCTGATCCGAACAAAATTAGGGTTCTAGGGATCCA
AAAAAATTAGGGTTTTAGGGTTTCTCGATCATACAAAATACAAATGGCAT
CACCAGCAGTAGTACCCTCTCAACCTCGTTCTTCGAAAACGGAGTCCTAC
GTGGACAACAAGCGAAAAGAAGACATCCGCCAAGCCAATATCGTGGCGGC
GCGAGCCGTCGCCGATGCCGTGCGTACCAGTCTTGGCCCCAAAGGCATGG
ACAAGATGATCTCCACAGCCAGCGGGGAGGTCATCATCACCAATGACGGC
GCTACCATCTTGAACAAAATGGAAGTCCTCCAGCCCGCCGCCAAGATGCT
TGTTGAACTCTCCAAGTCTCAGGACGCCGCCGCCGGAGATGGTACCACCA
CCGTCGTCGTCATCGCCGGCGCCTTGTTGAAACAGTGCCTCATCCTGTTG
TCCAGCGGAATCCATCCCACCGTTATCTCCGATACTCTACACAAGGCCGC
GATCCATGCCGTCGATGTGCTCACTGCAATGGCCGTGCCGGTCGAGTTAT
CCGACCGTGACAGCTTGGTTAAGTCCGCGAGCACCTCGTTAAACAGTAAG
GTCGTGAGTCAGTACTCGACCTTACCGGGCGCCGTTACCTGTTGAAAGCG
TTTTATCATTCCTGGACCCAAACCAACCAGATTTGGTCGATTTAAAAAAT
ATAGGAAATTGAAAAAATTAGGAAGGACCATTTGAGATACAAAGTTGTTA
AAGGATTGGTTTTCAAAAAAAAAGGCGATTCAGCCTCACGGGGGCCCAAC
CCGGGGGAAAAAGCCAAATTTGCCGGGATTCATTTTCAAATTTCCCCCCC
AAAAAGAAAAAAACACAAAAACTTTGGGGTTTC
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