DY259778

Overview
NameDY259778
Unique NameDY259778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259778_ssr200 microsatellite DY259778_ssr200:200..211. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_SOYBN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Glycine max GN=ACPD PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.237e-84
Identity = 153/200 (76.50%), Postives = 171/200 (85.50%), Query Frame = 2
Query:  224 RCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  R  MASTL    +KEV N+KKP+ PPREVHVQVTHSMP QK+EIF+SLE WAEENIL HLKPVEKCWQP D+LP+P S+GF EQVKELRER KE+PDDYFVVLVGDMITEEALPTYQTMLNTL+GVRDETGASLTSWAIWTRAWTAE+NRHGDLLNKYLYLSGRV++KQ EKTI         P+ + +PYLGF++T
Sbjct:   22 RSPRFRMASTLRSG-SKEVENIKKPFTPPREVHVQVTHSMPPQKIEIFQSLEDWAEENILAHLKPVEKCWQPQDFLPDPSSDGFEEQVKELRERAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYT 220          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_SIMCH (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Simmondsia chinensis PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 1.237e-84
Identity = 150/200 (75.00%), Postives = 169/200 (84.50%), Query Frame = 2
Query:  224 RCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  RVFMAS+     +KE+ N KKP+ PPRE HVQ THSMP QK+EIFKSLEGWAEEN+LVHLKPVEKCWQP D+LP+P SEGF +QVKELRER KEIPD+Y VVLVGDMITEEALPTYQTMLNTL+GVRDETGASLTSWAIWTRAWTAE+NRHGDLLNKYLYL+GRV++KQ EKTI         P+ +  PYLGF++T
Sbjct:   28 RSHRVFMASSTIGITSKEIPNAKKPHMPPREAHVQKTHSMPPQKIEIFKSLEGWAEENVLVHLKPVEKCWQPQDFLPDPASEGFMDQVKELRERTKEIPDEYLVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAIWTRAWTAEENRHGDLLNKYLYLTGRVDMKQIEKTIQYLIGSGMDPRSENNPYLGFIYT 227          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_SOLCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum commersonii PE=2 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 1.615e-84
Identity = 153/201 (76.12%), Postives = 171/201 (85.07%), Query Frame = 2
Query:  224 RCSRVFMASTL-PPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  RVFMASTL PP++  E GN+KKP+ PPREVHVQVTHSMP +K EIF SL GWA+ NILVHLKPVEKCWQ  D+LP+P SEGF +QVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTL+GVRDETGASLT WAIWTRAWTAE+NRHGDLLNKYLYLSGRV+++Q EKTI         P+ +  PYLGF++T
Sbjct:   24 RSPRVFMASTLRPPSV--EDGNVKKPFSPPREVHVQVTHSMPPEKREIFDSLHGWADNNILVHLKPVEKCWQASDFLPDPASEGFEDQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYT 222          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_RICCO (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.615e-84
Identity = 152/200 (76.00%), Postives = 172/200 (86.00%), Query Frame = 2
Query:  224 RCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  + +MASTL    +KEV NLKKP+ PPREVHVQVTHSMP QK+EIFKSL+ WAEENILVHLKPVEKCWQP D+LP+P S+GF EQV+ELRER KEIPDDYFVVLVGDMITEEALPTYQTMLNTL+GVRDETGAS TSWAIWTRAWTAE+NRHGDLLNKYLYLSGRV+++Q EKTI         P+ + +PYLGF++T
Sbjct:   27 RSPKFYMASTLKSG-SKEVENLKKPFMPPREVHVQVTHSMPPQKIEIFKSLDNWAEENILVHLKPVEKCWQPQDFLPDPASDGFDEQVRELRERAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENSPYLGFIYT 225          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_ELAGV (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Elaeis guineensis var. tenera PE=2 SV=2)

HSP 1 Score: 308.145 bits (788), Expect = 5.196e-83
Identity = 149/203 (73.40%), Postives = 170/203 (83.74%), Query Frame = 2
Query:  215 RKHRCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  R  R+ MAST+ P+   E+   KKP+ PPREVHVQVTHSMP QK+EIFKSLE WAE NILVHLKPVEKCWQP D+LP+P SEGF+E+VKELRER KEIPD Y+V LVGDMITEEALPTYQTMLNTL+GVRDETGASLTSWA+WTRAWTAE+NRHGDLLNKYLYLSGRV++KQ EKTI         P+ + +PYLGF++T
Sbjct:   22 RSTRSPRISMASTVGPSTKVEIP--KKPFMPPREVHVQVTHSMPPQKIEIFKSLEDWAENNILVHLKPVEKCWQPQDFLPDPSSEGFHEEVKELRERSKEIPDGYYVCLVGDMITEEALPTYQTMLNTLDGVRDETGASLTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENSPYLGFIYT 222          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_SPIOL (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.974e-82
Identity = 145/200 (72.50%), Postives = 168/200 (84.00%), Query Frame = 2
Query:  224 RCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  + FMASTL  +  KE  +LKKP+ PPREVHVQVTHSMPQ+K+EIFKSLEGWAEEN+LVHLKPVEKCWQP DYLP+P SE F +QVKE++ER KEIPDD +VVLVGDMITEEALPTYQTMLNTL+G +DETGAS TSWA+WTRAWTAE+NRHGDLLNKYLYLSGRV+++  EKTI         P+ +  PYLGF++T
Sbjct:   29 RSPKFFMASTLSSSSPKEAESLKKPFSPPREVHVQVTHSMPQEKIEIFKSLEGWAEENLLVHLKPVEKCWQPQDYLPDPASEDFRDQVKEIQERAKEIPDDLYVVLVGDMITEEALPTYQTMLNTLDGAKDETGASPTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMRSIEKTIQYLIGSGMDPRTENNPYLGFVYT 228          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_SOLTU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.974e-82
Identity = 149/207 (71.98%), Postives = 175/207 (84.54%), Query Frame = 2
Query:  224 RCSRVFMASTLP-PAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHTFIPRKG 841
            R  RVFMAST+  P++  EVG++KK + PPREVHVQVTHSMP +K+E+F SL  WA +N+LVHLKPVEKCWQP D+LP+P SEGF EQVKELRERCKEIPDDYFVVL+GDMITEEALPTYQTM+NTL+GVRDETGA++T WAIWTRAWTAE+NRHGDLLNKYLYLSGRV++KQ EKTI         P+ +  PYLGF++T + RKG
Sbjct:   24 RSERVFMASTIHRPSV--EVGSVKKAFTPPREVHVQVTHSMPPEKIEVFDSLRDWAAQNLLVHLKPVEKCWQPTDFLPDPASEGFDEQVKELRERCKEIPDDYFVVLIGDMITEEALPTYQTMINTLDGVRDETGATVTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENNPYLGFVYTSL-RKG 227          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_GOSHI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 3.724e-81
Identity = 145/200 (72.50%), Postives = 166/200 (83.00%), Query Frame = 2
Query:  224 RCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  +  M ST+P   +KEVGNLKKP+ PP+EV VQ+THSMP  K+EIFKSLEGWAE NIL HLKPVEKCWQP D+LP+P S+GF+EQVKELRER KEIPDDYFVVLVGDMITEEAL TYQTMLNTL+G RDETGASLT WAIWTRAWTAE+NRHGDLLNKYLYLSGRV+++Q E+TI         P  + +PY GF++T
Sbjct:   27 RSPKFSMISTIPSG-SKEVGNLKKPFTPPKEVPVQITHSMPPHKIEIFKSLEGWAENNILTHLKPVEKCWQPADFLPDPNSDGFHEQVKELRERAKEIPDDYFVVLVGDMITEEALSTYQTMLNTLDGTRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIERTIQYLIGSGMDPHTENSPYRGFIYT 225          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_CUCSA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 1.083e-80
Identity = 145/200 (72.50%), Postives = 168/200 (84.00%), Query Frame = 2
Query:  224 RCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  +  MASTL  + ++EV  LKKP+ PPREVH+QVTHSMP QKMEIFKSLE WAEEN+LVHLKPVE+CWQP D+LP+   EGF+EQV+ELRER KE+PD+YFVVLVGDMITEEALPTYQTMLNTL+GVRDETGAS T WAIWTRAWTAE+NRHGDLLNKYLYLSGRV+++Q EKTI         P+ +  PYLGF++T
Sbjct:   27 RSPKFVMASTLR-STSREVETLKKPFMPPREVHLQVTHSMPPQKMEIFKSLEDWAEENLLVHLKPVERCWQPQDFLPDSAFEGFHEQVRELRERAKELPDEYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQVEKTIQYLIGSGMDPRTENNPYLGFIYT 225          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_CARTI (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Carthamus tinctorius PE=1 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 1.415e-80
Identity = 146/200 (73.00%), Postives = 168/200 (84.00%), Query Frame = 2
Query:  224 RCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  +  MASTL  + T +V N KKP+ PPREVHVQVTHSMP QK+EIFKS+EGWAE+NILVHLKPVEKCWQ  D+LP+P SEGF EQVKELR R KEIPDDYFVVLVGDMITEEALPTYQTMLNTL+GVRDETGASLT WA+WTRAWTAE+NRHGDLL+ YLYLSGRV+++Q +KTI         P+ + +PYLGF++T
Sbjct:   27 RSPKFAMASTLGSS-TPKVDNAKKPFQPPREVHVQVTHSMPPQKIEIFKSIEGWAEQNILVHLKPVEKCWQAQDFLPDPASEGFDEQVKELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAVWTRAWTAEENRHGDLLHTYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENSPYLGFIYT 225          
The following BLAST results are available for this feature:
BLAST of DY259778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_SOYBN1.237e-8476.50Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SIMCH1.237e-8475.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLCO1.615e-8476.12Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_RICCO1.615e-8476.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ELAGV5.196e-8373.40Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SPIOL1.974e-8272.50Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SOLTU1.974e-8271.98Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_GOSHI3.724e-8172.50Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CUCSA1.083e-8072.50Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CARTI1.415e-8073.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259778 ID=DY259778; Name=DY259778; organism=Citrus clementina; type=EST; length=1028bp
CTTCTCTTCGTGTTTTGTTTCATTTCTCCCTGTTTTGTCTTGGCCATTTC
TTTGACACATACGTACGTAAATTAAACTTTATTTTTTTTTTTTTTCAAAA
TATCATCGTCATCTTCTTCGATAAAAACGATATCTTTTGAAATAAACATT
TACAGCAATGGCTTTGAAACTGAATCCAACAACATTCAGCTTCCCGTCGT
CATCATCATCAATCCGCAAACACAGATGTTCAAGAGTCTTCATGGCATCC
ACTCTTCCTCCTGCTATCACCAAAGAGGTTGGGAATCTTAAGAAGCCGTA
TTGCCCTCCAAGGGAGGTACACGTTCAAGTAACTCATTCTATGCCACAAC
AAAAGATGGAGATATTCAAATCTTTGGAGGGTTGGGCTGAGGAGAATATC
TTGGTGCACCTAAAGCCTGTTGAGAAATGCTGGCAACCCATGGATTATCT
GCCGGAACCTGAATCGGAAGGATTTTATGAGCAAGTCAAGGAGTTGAGAG
AAAGATGCAAGGAAATCCCTGATGACTATTTTGTTGTATTGGTTGGAGAT
ATGATCACAGAAGAAGCCCTTCCTACTTACCAGACAATGCTGAACACCCT
AAACGGGGTTCGAGATGAGACTGGTGCAAGCCTCACTTCTTGGGCAATTT
GGACTAGGGCTTGGACTGCTGAAAAAAACAGGCATGGCGACCTTCTCAAT
AAGTATCTCTACCTATCTGGACGTGTAAACCTGAAACAAAATGAAAAAAC
AATTCATACCTGATAGGATCAAGAATGGATCCCAAAAAAAAAAACAACCC
CCTACCTTGGTTTCCTCCACACCTTCATTCCAAGAAAGGGCAACCTTTAA
CTTCCCATGGAAACCACCCCCAAAAATGCCCAAGGAAAATTACGAAACCT
TGGAAACCTTGCAACAAAAATTGGGGACCCCTTGCCCCCTGAAAAAAAAA
CCCCCATGAAAACCGGCCAACCCACAAAATTTGGGAAAAAACCCCTTTTA
AAATTTGTACCCCAAAGGGGCCTCGGCT
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