DY259780

Overview
NameDY259780
Unique NameDY259780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length950
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259780 vs. ExPASy Swiss-Prot
Match: FB84_ARATH (F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 289.271 bits (739), Expect = 2.228e-77
Identity = 159/280 (56.79%), Postives = 194/280 (69.29%), Query Frame = 3
Query:  117 MKQRTWPDRSTGSRFTALQFPITEKDNRRPELTXXXXXXXXXXXXXFSCSRSIKS----TEGHDFASLPFDFLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQPANAEEAVKLLYQASIAGHVRAQYPLALCLHRGRGVDFNPQEAARWYLRAAEGGYVRAM*QPLPFPIPLGKGLPLNSRQSQEKGEKEQLDWG 941
            MKQRTWP RS GSRF++L F      ++R  ++              S S S  S     E  DF+ LP+D L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE  +KE A++LYR+A+ LGD  GQ NLGI+YLQ QP+N +EA+K L Q++  G+VRAQY LALCLH GR V  N  EA +WYL+AAEGGYVRAM   +     +G+GLP N R+   K  K   D G
Sbjct:    1 MKQRTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSNEFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRGGVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNLGIAYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAEGGYVRAM-YNISLCYSVGEGLPQN-RKLARKWMKRAADHG 278          
BLAST of DY259780 vs. ExPASy Swiss-Prot
Match: SE1L1_RAT (Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Sel1l PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  456 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYPLALCLHRGRGVDFNPQEAARWYLRAAEGGYVRA 839
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q  L    + G GV  + ++A +++  A++GG++ A
Sbjct:  387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILA 521          
BLAST of DY259780 vs. ExPASy Swiss-Prot
Match: SE1L1_MOUSE (Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  456 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYPLALCLHRGRGVDFNPQEAARWYLRAAEGGYVRA 839
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q  L    + G GV  + ++A +++  A++GG++ A
Sbjct:  383 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILA 517          
BLAST of DY259780 vs. ExPASy Swiss-Prot
Match: SE1L1_MESAU (Protein sel-1 homolog 1 OS=Mesocricetus auratus GN=Sel1l PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  456 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYPLALCLHRGRGVDFNPQEAARWYLRAAEGGYVRA 839
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q  L    + G GV  + ++A +++  A++GG++ A
Sbjct:  387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGIQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILA 521          
BLAST of DY259780 vs. ExPASy Swiss-Prot
Match: SE1L1_HUMAN (Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 6.182e-11
Identity = 44/135 (32.59%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  456 GRGVRKNLDKALDSFLKGAARGSTLAMVDAGLMYWE-----MDKKEAAISLYRQAAVLGDPAGQFNLGISYLQAQ--PANAEEAVKLLYQASIAGHVRAQYPLALCLHRGRGVDFNPQEAARWYLRAAEGGYVRA 839
            GRGV +N  +A D F   A  G++ AM   G MY E         E A+  +++AA +G+P GQ  LG++YL  +    N + A+K   +A+  G V  Q  L    + G GV  + ++A +++  A++GG++ A
Sbjct:  387 GRGVEQNHQRAFDYFNLAANAGNSHAMAFLGKMYSEGSDIVPQSNETALHYFKKAADMGNPVGQSGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYFNLASQGGHILA 521          
The following BLAST results are available for this feature:
BLAST of DY259780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FB84_ARATH2.228e-7756.79F-box protein At1g70590 OS=Arabidopsis thaliana GN... [more]
SE1L1_RAT6.182e-1132.59Protein sel-1 homolog 1 OS=Rattus norvegicus GN=Se... [more]
SE1L1_MOUSE6.182e-1132.59Protein sel-1 homolog 1 OS=Mus musculus GN=Sel1l P... [more]
SE1L1_MESAU6.182e-1132.59Protein sel-1 homolog 1 OS=Mesocricetus auratus GN... [more]
SE1L1_HUMAN6.182e-1132.59Protein sel-1 homolog 1 OS=Homo sapiens GN=SEL1L P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YC20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259780 ID=DY259780; Name=DY259780; organism=Citrus clementina; type=EST; length=950bp
CGGAGAGTTGGTGCAGAAATTTCGCCACACGGAATATTTCCCCACACGGA
ATTAAGCACAAATACTGTACTTTTGACGACTACAGAATACAGACGGTTGT
TCACAGAAATGGGAAGATGAAGCAAAGAACATGGCCGGATCGATCGACCG
GCTCTCGGTTCACAGCTCTTCAATTCCCGATAACCGAGAAGGACAACCGC
CGGCCAGAACTCACCGCCAGTGCACGGAAGGCTAGAATCAAACGGCGCAG
CCGCTTCAGCTGCTCACGATCAATAAAATCAACGGAGGGTCATGATTTCG
CGAGCCTACCGTTCGATTTCTTGAACAAAATCGCAGCGTCATTCACGCTG
CCTCAACTGAGAGCGGCGTCGCTGGTGTGCAAGTCATGGAACGACGCGCT
TCGGCCGTTGAGAGAGGCGATGGTGTTACTAAGATGGGGGAAACGATTCA
AGCACGGCCGAGGCGTCCGCAAGAACTTGGATAAGGCTCTCGACTCGTTC
TTGAAAGGCGCGGCTCGCGGCTCCACGCTTGCTATGGTTGACGCCGGACT
GATGTATTGGGAGATGGACAAAAAGGAGGCGGCTATTAGCTTGTATCGGC
AAGCCGCTGTGCTTGGAGATCCAGCTGGTCAGTTCAATTTGGGAATTTCT
TATTTGCAAGCGCAACCTGCAAATGCAGAGGAAGCTGTGAAGTTGTTGTA
TCAAGCATCGATTGCTGGCCATGTTCGAGCTCAGTATCCACTTGCACTTT
GCCTGCATAGAGGTCGAGGAGTGGATTTCAATCCTCAAGAGGCTGCTAGG
TGGTATTTAAGAGCTGCTGAAGGTGGCTATGTGCGTGCCATGTAACAACC
CCTCCCCTTTCCTATTCCTTTGGGGAAAGGCTTGCCCCTGAATTCCCGAC
AAAGCCAAGAAAAGGGAGAAAAAGAACAACTTGATTGGGGGCCCGGGCAA
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