DY259786

Overview
NameDY259786
Unique NameDY259786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length950
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1309 contig Ccv1_Contig1309:1..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S2_PONAB (AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.081e-39
Identity = 76/150 (50.67%), Postives = 109/150 (72.67%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGT-RLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MI++++V N  GKPRL +FY   P E QQ+++R  F ++  R DN+ NF+E  S+ G    +L+Y+H+ATLYFVF  DSSE+EL +LDLIQVFVETLDKCF+NVCELD++++  K+H IL E++ GG VLET+  E++  +E  ++   S
Sbjct:    1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKS 150          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S2_MOUSE (AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap3s2 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.081e-39
Identity = 76/150 (50.67%), Postives = 109/150 (72.67%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGT-RLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MI++++V N  GKPRL +FY   P E QQ+++R  F ++  R DN+ NF+E  S+ G    +L+Y+H+ATLYFVF  DSSE+EL +LDLIQVFVETLDKCF+NVCELD++++  K+H IL E++ GG VLET+  E++  +E  ++   S
Sbjct:    1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKS 150          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S2_HUMAN (AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.081e-39
Identity = 76/150 (50.67%), Postives = 109/150 (72.67%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGT-RLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MI++++V N  GKPRL +FY   P E QQ+++R  F ++  R DN+ NF+E  S+ G    +L+Y+H+ATLYFVF  DSSE+EL +LDLIQVFVETLDKCF+NVCELD++++  K+H IL E++ GG VLET+  E++  +E  ++   S
Sbjct:    1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKS 150          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S2_BOVIN (AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S2 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 1.081e-39
Identity = 76/150 (50.67%), Postives = 109/150 (72.67%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGT-RLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MI++++V N  GKPRL +FY   P E QQ+++R  F ++  R DN+ NF+E  S+ G    +L+Y+H+ATLYFVF  DSSE+EL +LDLIQVFVETLDKCF+NVCELD++++  K+H IL E++ GG VLET+  E++  +E  ++   S
Sbjct:    1 MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQIEAQNRLEKS 150          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S1_MOUSE (AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap3s1 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 1.561e-38
Identity = 75/150 (50.00%), Postives = 108/150 (72.00%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPG-TRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MIK++++ N  GKPRL+KFY     + QQ++IR  F ++  R +NV NF+E   + G    +L+Y+H+ATLYFVF  DSSE+EL +LDLIQVFVETLDKCF+NVCELD++++  K+H IL E++ GG VLET+  E++  ++  +K   S
Sbjct:    1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKS 150          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S1_HUMAN (AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP3S1 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.561e-38
Identity = 75/150 (50.00%), Postives = 108/150 (72.00%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPG-TRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MIK++++ N  GKPRL+KFY     + QQ++IR  F ++  R +NV NF+E   + G    +L+Y+H+ATLYFVF  DSSE+EL +LDLIQVFVETLDKCF+NVCELD++++  K+H IL E++ GG VLET+  E++  ++  +K   S
Sbjct:    1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKS 150          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S1_BOVIN (AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.561e-38
Identity = 75/150 (50.00%), Postives = 108/150 (72.00%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPG-TRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MIK++++ N  GKPRL+KFY     + QQ++IR  F ++  R +NV NF+E   + G    +L+Y+H+ATLYFVF  DSSE+EL +LDLIQVFVETLDKCF+NVCELD++++  K+H IL E++ GG VLET+  E++  ++  +K   S
Sbjct:    1 MIKAILIFNNHGKPRLSKFYQPYSEDTQQQIIRETFHLVSKRDENVCNFLEGGLLIGGSDNKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHVDKVHNILAEMVMGGMVLETNMNEIVTQIDAQNKLEKS 150          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S_DICDI (AP-3 complex subunit sigma OS=Dictyostelium discoideum GN=ap3s1 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.559e-37
Identity = 70/135 (51.85%), Postives = 104/135 (77.04%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEA---DSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETS 503
            MIKS++++N  GKPRL KFY+    EKQQ++IR +F ++  R +   NF+E     +IF   T+++Y+H+ATL+F+F  DSSE+EL+++DLIQ FVE+LDKCF+NVCELD++++  K+H ILDE++ GG VLET+
Sbjct:    1 MIKSILIINNHGKPRLIKFYEHYSEEKQQQIIRELFLLVSKRTERSCNFLEIGNNSNIFDKDTKIIYRHYATLFFIFCVDSSESELSIIDLIQTFVESLDKCFENVCELDLIFHIDKVHYILDEMVMGGLVLETN 135          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S_SCHPO (AP-3 complex subunit sigma OS=Schizosaccharomyces pombe GN=aps3 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.672e-32
Identity = 68/141 (48.23%), Postives = 96/141 (68.09%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVE 530
            MI +V + N +GKPRL KFY       QQ+LI  ++  +  R     NF+E++ I G   R++Y+ +ATLYFVFV D  E+EL +LDLIQVFVE LD+CF NVCELD+V+ + ++H IL E++ GG VLET+  E++ A +
Sbjct:    1 MIYAVFIFNNKGKPRLTKFYTPIDESIQQKLIGDIYAAVSTRPPTACNFLESNLIAGKN-RIIYRQYATLYFVFVVDEGESELGILDLIQVFVEALDRCFNNVCELDLVFKFQEIHAILAEVVSGGLVLETNLNEIVLAAQ 140          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S_YEAST (AP-3 complex subunit sigma OS=Saccharomyces cerevisiae GN=APS3 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.762e-27
Identity = 61/162 (37.65%), Postives = 102/162 (62.96%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADN-------------VSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MI +V++ N + +PRL KFY    + KQ+ L+  V+ ++  R  +             +SN    D +     +++YK++ATLYF F+ D  E+ELA+LDLIQ FVE+LD+CF  V ELD+++N+  L ++L+EI+ GG V+ET+   ++ +V+E++K + S
Sbjct:    1 MIHAVLIFNKKCQPRLVKFYTPVDLPKQKLLLEQVYELISQRNSDFQSSFLVTPPSLLLSNENNNDEVNNEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVESLDRCFTEVNELDLIFNWQTLESVLEEIVQGGMVIETNVNRIVASVDELNKAAES 162          
The following BLAST results are available for this feature:
BLAST of DY259786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP3S2_PONAB1.081e-3950.67AP-3 complex subunit sigma-2 OS=Pongo abelii GN=AP... [more]
AP3S2_MOUSE1.081e-3950.67AP-3 complex subunit sigma-2 OS=Mus musculus GN=Ap... [more]
AP3S2_HUMAN1.081e-3950.67AP-3 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
AP3S2_BOVIN1.081e-3950.67AP-3 complex subunit sigma-2 OS=Bos taurus GN=AP3S... [more]
AP3S1_MOUSE1.561e-3850.00AP-3 complex subunit sigma-1 OS=Mus musculus GN=Ap... [more]
AP3S1_HUMAN1.561e-3850.00AP-3 complex subunit sigma-1 OS=Homo sapiens GN=AP... [more]
AP3S1_BOVIN1.561e-3850.00AP-3 complex subunit sigma-1 OS=Bos taurus GN=AP3S... [more]
AP3S_DICDI6.559e-3751.85AP-3 complex subunit sigma OS=Dictyostelium discoi... [more]
AP3S_SCHPO1.672e-3248.23AP-3 complex subunit sigma OS=Schizosaccharomyces ... [more]
AP3S_YEAST2.762e-2737.65AP-3 complex subunit sigma OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259786 ID=DY259786; Name=DY259786; organism=Citrus clementina; type=EST; length=950bp
AATTGTATATTTAAAAAAAAAAAGAAAGGAAGCCATTGATCACTGTCTGA
TCAGTCGATCTGTAGTTTACTTGCTTGGAGCGGGAATAGAAAGCCAAAGG
AATAAAAATGATAAAATCGGTGATGGTTATGAACACGCAGGGCAAGCCTC
GCCTCGCGAAATTTTACGATTTTCAGCCCGTGGAGAAGCAGCAAGAGCTA
ATACGCAGCGTTTTCGGAGTCTTATGCGGTAGAGCTGATAATGTCAGCAA
TTTTGTTGAGGCTGATTCAATTTTCGGCCCGGGTACACGCCTTGTATATA
AGCACTTTGCAACTCTGTACTTCGTCTTCGTATTTGACAGTTCTGAAAAT
GAGCTAGCTATGCTTGATCTTATACAAGTTTTCGTGGAGACTTTAGACAA
ATGCTTCAAAAATGTATGTGAGCTCGACATTGTGTACAACTACAGCAAGT
TGCACACTATTCTTGATGAGATTATTTTTGGAGGTCAAGTGCTGGAAACA
AGTTCTATAGAAGTGATCAAGGCTGTTGAAGAAATATCAAAGTGCTCTCC
CTCTCTCTCCCTCTACCTGTTTGTCTTTCTTCGGGCCTAGTACTCGCCCA
CTTTTGTTATGTTATAACTAATAGATGATTCTGCCTGTTGCAGGCTGGAA
TCCGCCCCAAACGCTATCGCACTTGTCTCCAAGTCTGTTTCTGGTTGGCG
AAATCCGTAGCCTGTAGTAATGCACCTGTTAAAAAAATCCATGTCCCAAT
TTGAATTTGAAATGCAATTACCTTCCCTTTCCAAACTTATTTGTGTTGGA
AAGGGTGGTAGCCGGGATTTCAATTGGCCCGCCATATGAACCCGGGTTCC
AAATTTGGGAAAAATTTTTCCTCCTTGACCCCCTAAAATTGGATTCCAAC
CCATAAAAAAAAACCCCTGGGGGCCACCTACCAAAACCCGGAGGGCGGAG
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