DY259791

Overview
NameDY259791
Unique NameDY259791
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length880
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259791_ssr620 microsatellite DY259791_ssr620:620..631. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15153 contig Ccv1_Contig15153:90..978. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.954e-97
Identity = 179/279 (64.16%), Postives = 202/279 (72.40%), Query Frame = 1
Query:   40 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNKEPS*SAAPK*KILDEWKKLYS 876
            MALVLH G  NKN FK LIAAEY GV+V+L +NFEMGV+NK+PEFLKMNPLGK+PVLETP+G VFESNAIARYVARLK ++ LCGSSLIDY+H+EQWMDFSA E+DANI RWLYPRLG+  Y+P+ EE A+ +LKR+L ALN HLASNTYLVGHSVTLADIVM CNLYYGF  I+ K+FTSEFPHVERYFWT+ NQP  KK +GDFKQAESVP VQ                                       P K P     P   ILDEWK+LYS
Sbjct:    1 MALVLHCGSGNKNAFKALIAAEYTGVKVELTKNFEMGVSNKTPEFLKMNPLGKIPVLETPEGAVFESNAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSATEVDANIGRWLYPRLGFGPYVPVLEEFAITSLKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKVIGDFKQAESVPPVQKKAAPPKESKAKEAKKEAPKEAPKPKVEASEEEEAPKPKP-KNPLDLLPPSKMILDEWKRLYS 278          
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 351.673 bits (901), Expect = 3.266e-96
Identity = 179/280 (63.93%), Postives = 200/280 (71.43%), Query Frame = 1
Query:   40 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPN-KEPS*SAAPK*KILDEWKKLYS 876
            MALVLH G  NKN FK LIAAEY+GV+V+L +NF+MGV+NK+PEFLKMNP+GK+PVLETPDGPVFESNAIARYV R KADN L GSSLI+YAH+EQW DFSA E+DANI +WLYPRLG   Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK+FTSEFPHVERYFWT+ NQP  KK LGD KQAESVP VQ                                       P  K P     P   ILDEWK+LYS
Sbjct:    1 MALVLHAGSGNKNAFKALIAAEYSGVKVELVKNFQMGVSNKTPEFLKMNPIGKIPVLETPDGPVFESNAIARYVTRSKADNPLYGSSLIEYAHIEQWNDFSATEVDANIGKWLYPRLGIAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKSFTSEFPHVERYFWTMVNQPNFKKVLGDVKQAESVPPVQKKAPPPKEQKPKEAKKEAPKEAPKPKAVEKPEEEEEAPKPKPKNPLDLLPPSKMILDEWKRLYS 280          
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 5.214e-94
Identity = 173/280 (61.79%), Postives = 200/280 (71.43%), Query Frame = 1
Query:   40 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPN-KEPS*SAAPK*KILDEWKKLYS 876
            MALVLH    NKN FK LIAAEY+GV+V+LA+NF+MGV+NK+PE+LKMNP+GKVP+LETPDGPVFESNAIARYV R K+DN L GSSLI+YAH+EQW+DFSA E+DAN  +WL+PRLG+  Y+ ++EE A+AALKR+L ALN HLASNTYLVGHSVTLADIVM CNLY GF  IMTK FTSEFPHVERYFWT+ NQP  KK +GD KQA+SVP VQ                                       P  K P     P   ILDEWK+LYS
Sbjct:    1 MALVLHTFDGNKNAFKALIAAEYSGVKVELAKNFQMGVSNKTPEYLKMNPIGKVPILETPDGPVFESNAIARYVTRSKSDNPLYGSSLIEYAHIEQWIDFSATEVDANTGKWLFPRLGFAPYVAVSEEAAIAALKRSLGALNTHLASNTYLVGHSVTLADIVMTCNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKVMGDVKQADSVPQVQKKAAAPKEQKPKEAKKEAPKEAPKPKAAEKPEEEEEAPKPKPKNPLDLLPPSKMILDEWKRLYS 280          
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 6.374e-92
Identity = 160/217 (73.73%), Postives = 184/217 (84.79%), Query Frame = 1
Query:   40 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQS 690
            MALVLH G+ NKN FK LI AEY GV+V+LA +FEMGVTNK+PE+LK+NP+GKVP+LETPDGP+FESNAIARYVARLKADN L GSSLIDYAH+EQW+DF ++EIDANI  W  PR GY  Y+P AEE A++ALKRAL ALN HLASNTYLVGH VTLADI++ CNL++GF  +M K+FTSEFPHVERYFWT+ NQPK KK LGD KQ ESVP V S
Sbjct:    1 MALVLHAGKTNKNAFKTLIVAEYTGVKVELAPDFEMGVTNKTPEYLKLNPIGKVPLLETPDGPIFESNAIARYVARLKADNPLIGSSLIDYAHIEQWIDFGSLEIDANIISWFRPRFGYAVYLPPAEEAAISALKRALGALNTHLASNTYLVGHFVTLADIIVTCNLFFGFTKLMIKSFTSEFPHVERYFWTLVNQPKFKKVLGDVKQTESVPPVPS 217          
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 8.343e-84
Identity = 158/279 (56.63%), Postives = 191/279 (68.46%), Query Frame = 1
Query:   40 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNKEPS*SAAPK*KILDEWKKLYS 876
            MALV+H  + NK   K LIAAEYAGV+++ + +F+MGVTNKSPEFLKMNP+GKVPVLETP+GP+FESNAIARYV+R   DN L GSSLI+YAH+EQW+DFS++EIDAN+ +W  PR+GY  +   AEE A++ALKR L+ALN HLASNT+LVGHSVTLADIV ICNL  GF  +MTK FTS FPHVERYFWT+ NQP+ KK LGD KQ E+VP V +                                     NP         P   +LD+WK+LYS
Sbjct:    1 MALVMHTYKGNKGANKALIAAEYAGVKIEESADFQMGVTNKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSSLEIDANMLKWFAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPVPTKKAPQPAKPKEEPKKAAPVAEAPKPAEEEEAPKPKAKNPLD----LLPPSPMVLDDWKRLYS 275          
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 9.225e-83
Identity = 157/279 (56.27%), Postives = 187/279 (67.03%), Query Frame = 1
Query:   40 MALVLHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGPVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESVPAVQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNPNKEPS*SAAPK*KILDEWKKLYS 876
            MALVLH  + NK+  K LIAAEY GV++ +  +F+MGVTNK+P FLKMNP+GKVPVLETP+G VFESNAIARYV+RL  DN L GSSLI+YA +EQW+DFS++EI A+I RW  PR+G+M Y   AEEGA++ LKRALDALN HL SNTYLVGHS+TLADI+ +CNL  GF  +MTK FTSEFPHVERYFWTV NQP   K LGD KQ E+VP + S                                        K P     P   +LD+WK+LYS
Sbjct:    1 MALVLHTYKGNKSAEKALIAAEYVGVQIDVPSDFQMGVTNKTPAFLKMNPIGKVPVLETPEGSVFESNAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSSLEIYASILRWFGPRMGFMPYSAPAEEGAISTLKRALDALNTHLTSNTYLVGHSITLADIITVCNLNLGFATVMTKKFTSEFPHVERYFWTVVNQPNFTKVLGDVKQTEAVPPIASKKAAQPAKPKEEPKKKEAPVAEAPKLAEEEEAPKPKA---KNPLDLLPPSPMVLDDWKRLYS 276          
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1G_ARTSA (Elongation factor 1-gamma OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 9.657e-40
Identity = 90/207 (43.48%), Postives = 128/207 (61.84%), Query Frame = 1
Query:   52 LHVGQENKNGFKGLIAAEYAGVEVKLAENFEMGVTNKSPEFLKMNPLGKVPVLETPDGP-VFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAE 669
            L+   EN   FK LIAA+Y+G ++++A++F  G TNKS  FLK  PLGKVP  E+ DG  + ESNAIA YVA    +  L GSS ++ A + QWM F+  EI      W++P LG MQ+   A   A   + +AL AL+ HL + TYLVG  +TLADIV+ C L + ++H++ + F   + +  R+F T+ NQ ++K  +GDFK  E
Sbjct:    6 LYTYPENFRAFKALIAAQYSGAKLEIAKSFVFGETNKSDAFLKSFPLGKVPAFESADGHCIAESNAIAYYVA----NETLRGSSDLEKAQIIQWMTFADTEILPASCTWVFPVLGIMQFNKQATARAKEDIDKALQALDDHLLTRTYLVGERITLADIVVTCTLLHLYQHVLDEAFRKSYVNTNRWFITLINQKQVKAVIGDFKLCE 208          
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1GA_XENLA (Elongation factor 1-gamma-A OS=Xenopus laevis GN=eef1g-A PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.379e-38
Identity = 88/212 (41.51%), Postives = 128/212 (60.38%), Query Frame = 1
Query:   52 LHVGQENKNGFKGLIAAEYAGVEVKLAEN---FEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESV 675
            L+   +N   +K LIAA+Y+G  +K+A +   F+ GVTNK+PEFLK  PLGKVP  E  DG  +FES+AIA YV     +++L G++ +  A V QW+ FS   I    S W++P LG MQY   A E A   +K  L  L+ HL + T+LVG  +TLADI + C+L + +K ++  +F   F +V R+F T  NQP+ +  LG+ K  + +
Sbjct:    6 LYTYPDNWRAYKPLIAAQYSGFPIKVASSAPEFQFGVTNKTPEFLKKFPLGKVPAFEGKDGFCLFESSAIAHYVG----NDELRGTTRLHQAQVIQWVSFSDSHIVPPASAWVFPTLGIMQYNKQATEQAKEGIKTVLGVLDSHLQTRTFLVGERITLADITVTCSLLWLYKQVLEPSFRQPFGNVTRWFVTCVNQPEFRAVLGEVKLCDKM 213          
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1G_MOUSE (Elongation factor 1-gamma OS=Mus musculus GN=Eef1g PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 6.921e-38
Identity = 88/212 (41.51%), Postives = 125/212 (58.96%), Query Frame = 1
Query:   52 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESV 675
            L+   EN   FK LIAA+Y+G +V++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F T  NQP+ +  LG+ K  E +
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQVRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKM 213          
BLAST of DY259791 vs. ExPASy Swiss-Prot
Match: EF1G_RAT (Elongation factor 1-gamma OS=Rattus norvegicus GN=Eef1g PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 9.039e-38
Identity = 87/212 (41.04%), Postives = 125/212 (58.96%), Query Frame = 1
Query:   52 LHVGQENKNGFKGLIAAEYAGVEVKLAE---NFEMGVTNKSPEFLKMNPLGKVPVLETPDG-PVFESNAIARYVARLKADNQLCGSSLIDYAHVEQWMDFSAMEIDANISRWLYPRLGYMQYIPLAEEGAVAALKRALDALNIHLASNTYLVGHSVTLADIVMICNLYYGFKHIMTKTFTSEFPHVERYFWTVANQPKIKKFLGDFKQAESV 675
            L+   EN   FK LIAA+Y+G ++++     +F  G TN++PEFL+  P GKVP  E  DG  VFESNAIA YV+    + +L GS+    A V QW+ F+  +I    S W++P LG M +   A E A   +KR L  L+ HL + T+LVG  VTLADI ++C L + +K ++  +F   FP+  R+F T  NQP+ +  LG+ K  E +
Sbjct:    6 LYTYPENWRAFKALIAAQYSGAQIRVLSAPPHFHFGQTNRTPEFLRKFPAGKVPAFEGDDGFCVFESNAIAYYVS----NEELRGSTPEAAAQVVQWVSFADSDIVPPASTWVFPTLGIMHHNKQATENAKEEVKRILGLLDTHLKTRTFLVGERVTLADITVVCTLLWLYKQVLEPSFRQAFPNTNRWFLTCINQPQFRAILGEVKLCEKM 213          
The following BLAST results are available for this feature:
BLAST of DY259791 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
EF1G3_ORYSJ2.954e-9764.16Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ3.266e-9663.93Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G1_ORYSJ5.214e-9461.79Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G_PRUAV6.374e-9273.73Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G2_ARATH8.343e-8456.63Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH9.225e-8356.27Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G_ARTSA9.657e-4043.48Elongation factor 1-gamma OS=Artemia salina PE=1 S... [more]
EF1GA_XENLA2.379e-3841.51Elongation factor 1-gamma-A OS=Xenopus laevis GN=e... [more]
EF1G_MOUSE6.921e-3841.51Elongation factor 1-gamma OS=Mus musculus GN=Eef1g... [more]
EF1G_RAT9.039e-3841.04Elongation factor 1-gamma OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259791 ID=DY259791; Name=DY259791; organism=Citrus clementina; type=EST; length=880bp
CAGATCTGTAATTTGAGCGAATCGTTTCTCCGTTAAGCCATGGCTCTGGT
CTTGCATGTTGGGCAGGAAAACAAAAATGGATTCAAAGGACTCATTGCTG
CTGAGTACGCTGGTGTGGAAGTCAAATTGGCTGAGAATTTTGAGATGGGT
GTCACTAATAAATCCCCTGAATTTTTGAAGATGAACCCTCTTGGGAAGGT
TCCTGTGTTGGAGACACCTGATGGTCCGGTTTTTGAGAGCAATGCCATTG
CCCGTTATGTTGCACGTCTGAAAGCTGACAATCAACTATGTGGTTCTTCT
CTGATCGATTATGCTCATGTTGAGCAGTGGATGGATTTTTCTGCCATGGA
GATTGATGCTAATATCTCCAGGTGGTTATATCCAAGACTTGGATATATGC
AATACATTCCTCTGGCTGAGGAAGGTGCTGTTGCCGCACTGAAGAGAGCA
TTGGATGCTTTGAACATTCATTTGGCTTCAAATACGTACTTGGTTGGCCA
TTCTGTCACCCTGGCTGACATTGTCATGATATGCAATTTATATTATGGAT
TTAAGCACATCATGACGAAGACTTTCACCTCTGAGTTTCCCCATGTTGAG
AGATACTTTTGGACCGTGGCCAACCAACCAAAAATTAAGAAGTTTTTGGG
TGATTTTAAGCAAGCCGAATCTGTCCCAGCTGTTCAGTCTGCAAAGAAAC
CTGCTCAAGCTAAGGAATCTGCTAAACCAAAGGCCAAGGCGGAAACAAAG
AAAGAAGCACCAAAGCCCAAAGCTGAAGCTGCTGAAAAAGAGGAAGCACT
AAACCCAAACAAAGAACCCTCTTGATCTGCGGCCCCCAAGTAAAAGATTC
TGGATGAATGGAAAAAGCTTTACTCCAAAC
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