DY259794

Overview
NameDY259794
Unique NameDY259794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14790 contig Ccv1_Contig14790:2..1077. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ARP6_ARATH (Actin-related protein 6 OS=Arabidopsis thaliana GN=ARP6 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.304e-53
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = 1
Query:    1 DLTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            DLTN RFLVPE +FQPADLGMNQAGLAECIVRA+NSCH YL  VLY+SIILTGGSTLFP+  ERLE ELRPLVPD + VKITTQE+
Sbjct:  294 DLTNERFLVPETLFQPADLGMNQAGLAECIVRAINSCHSYLQPVLYQSIILTGGSTLFPQLKERLEGELRPLVPDHFDVKITTQED 379          

HSP 2 Score: 85.8853 bits (211), Expect = 2.304e-53
Identity = 38/42 (90.48%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  345 PLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFFH 470
            P+LGVWRGGSLLASSPDF++MCVTKAEYEE GSARCRRRFFH
Sbjct:  380 PILGVWRGGSLLASSPDFESMCVTKAEYEELGSARCRRRFFH 421          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSJ (Actin-related protein 6 OS=Oryza sativa subsp. japonica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.854e-51
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1
Query:    4 LTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            LTN RFLVPEM+F P DLGMNQAGLAECIVRA+ +CHP+L  VL+E IILTGGSTLFPRF ERLE+ELRPLVPDDYQVKI  QE+
Sbjct:  303 LTNERFLVPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFERIILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQED 387          

HSP 2 Score: 78.1814 bits (191), Expect = 7.854e-51
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 3
Query:  327 IFVLSSPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFFH 470
            I     P+LG WRGGSLLA  PDF++MC+TK+EYEE GS RCRRRFFH
Sbjct:  382 IIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRFFH 429          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ARP6_ORYSI (Actin-related protein 6 OS=Oryza sativa subsp. indica GN=ARP6 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.854e-51
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1
Query:    4 LTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            LTN RFLVPEM+F P DLGMNQAGLAECIVRA+ +CHP+L  VL+E IILTGGSTLFPRF ERLE+ELRPLVPDDYQVKI  QE+
Sbjct:  303 LTNERFLVPEMLFHPIDLGMNQAGLAECIVRAIQACHPHLQPVLFERIILTGGSTLFPRFTERLEKELRPLVPDDYQVKIIAQED 387          

HSP 2 Score: 78.1814 bits (191), Expect = 7.854e-51
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 3
Query:  327 IFVLSSPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFFH 470
            I     P+LG WRGGSLLA  PDF++MC+TK+EYEE GS RCRRRFFH
Sbjct:  382 IIAQEDPILGAWRGGSLLAHRPDFESMCITKSEYEEMGSMRCRRRFFH 429          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ARP6_DICDI (Actin-related protein 6 OS=Dictyostelium discoideum GN=arpF PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.539e-26
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    4 LTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKI 243
            L N RF VPE++F P+D+GMNQAGLAE IV+++N  +  LH  LY +IIL GGSTLFP   ERLE ELR L P+ Y + I
Sbjct:  365 LVNERFTVPELLFNPSDIGMNQAGLAESIVQSINCTNSNLHIPLYSNIILLGGSTLFPGLKERLELELRKLAPEQYNINI 444          

HSP 2 Score: 41.2022 bits (95), Expect = 6.539e-26
Identity = 19/48 (39.58%), Postives = 26/48 (54.17%), Query Frame = 3
Query:  324 NIFVLSSPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            NIF    P+L    GG  LA  PD+    ++K +YEE G   C ++FF
Sbjct:  443 NIFQPQDPILSPLYGGIRLAQQPDYLKYSISKQDYEEYGYNYCNKKFF 490          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ARP6_MOUSE (Actin-related protein 6 OS=Mus musculus GN=Actr6 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 9.176e-21
Identity = 34/84 (40.48%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    4 LTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE 255
            L N RF VPE++F P+D+G+ + G+ E IV ++ +    +    +++I+LTGG++LFP F ER+  E+R L P DY V +   E
Sbjct:  270 LANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRERVYSEVRCLTPTDYDVSVVLPE 353          

HSP 2 Score: 45.4394 bits (106), Expect = 9.176e-21
Identity = 17/47 (36.17%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  324 NIFVLSSPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRF 464
            ++ +  +P+   W GG L++ + DF+ M VT+ +YEENG + C  +F
Sbjct:  348 SVVLPENPITYSWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKF 394          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ARP6_HUMAN (Actin-related protein 6 OS=Homo sapiens GN=ACTR6 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.194e-20
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = 1
Query:    4 LTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE 255
            L N RF VPE++F P+D+G+ + G+ E IV ++ +    +    +++I+LTGG++LFP F +R+  E+R L P DY V +   E
Sbjct:  270 LANERFAVPEILFNPSDIGIQEMGIPEAIVYSIQNLPEEMQPHFFKNIVLTGGNSLFPGFRDRVYSEVRCLTPTDYDVSVVLPE 353          

HSP 2 Score: 46.2098 bits (108), Expect = 1.194e-20
Identity = 17/47 (36.17%), Postives = 30/47 (63.83%), Query Frame = 3
Query:  324 NIFVLSSPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRF 464
            ++ +  +P+   W GG L++ + DF+ M VT+ +YEENG + C  +F
Sbjct:  348 SVVLPENPITYAWEGGKLISENDDFEDMVVTREDYEENGHSVCEEKF 394          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ARP6_CHICK (Actin-related protein 6 OS=Gallus gallus GN=ACTR6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.417e-20
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    4 LTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQE 255
            LTN RF VPE++F P+D+G+ + G+ E IV ++ +    +    +++I+LTGG+TLFP F +R+  E+R L P DY V +   E
Sbjct:  270 LTNERFAVPEILFHPSDIGIQEMGIPEAIVDSIQNLPEEMQPHFFKNIVLTGGNTLFPGFRDRVYSEVRCLTPTDYDVSVVLPE 353          

HSP 2 Score: 41.2022 bits (95), Expect = 3.417e-20
Identity = 15/47 (31.91%), Postives = 29/47 (61.70%), Query Frame = 3
Query:  324 NIFVLSSPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRF 464
            ++ +  +P+   W GG L++ + DF+ + VT+ +YEE+G   C  +F
Sbjct:  348 SVVLPENPITYSWEGGKLISENDDFEDLVVTREDYEEHGHNICEEKF 394          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT3_DICDI (Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 8.009e-19
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  AG+ E    ++  C   +   LY +++L+GGST+FP  A+R+ +EL  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYSNVVLSGGSTMFPGIADRMNKELTALAPSTMKIKIIAPPE 335          

HSP 2 Score: 43.1282 bits (100), Expect = 8.009e-19
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 3
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS P FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLPTFQQMWISKEEYDESGPSIVHRKCF 376          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_FUCVE (Actin OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.290e-18
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE++FQP+ +GM  +G+ +C  + +  C   +   LY +I+L+GG+T+FP   ER+ +EL  L P   ++K+    E
Sbjct:  253 NERFRCPEVLFQPSFIGMESSGIHDCTFKTIMKCDVDIRKDLYGNIVLSGGTTMFPGIGERMTKELTALAPSTMKIKVVAPPE 335          

HSP 2 Score: 41.9726 bits (97), Expect = 2.290e-18
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 3
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++KAEY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 376          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_FUCDI (Actin OS=Fucus distichus PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.290e-18
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE++FQP+ +GM  +G+ +C  + +  C   +   LY +I+L+GG+T+FP   ER+ +EL  L P   ++K+    E
Sbjct:  252 NERFRCPEVLFQPSFIGMESSGIHDCTFKTIMKCDVDIRKDLYGNIVLSGGTTMFPGIGERMTKELTALAPSTMKIKVVAPPE 334          

HSP 2 Score: 41.9726 bits (97), Expect = 2.290e-18
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 3
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++KAEY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 375          
The following BLAST results are available for this feature:
BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
ARP6_ARATH2.304e-5381.40Actin-related protein 6 OS=Arabidopsis thaliana GN... [more]
ARP6_ORYSJ7.854e-5180.00Actin-related protein 6 OS=Oryza sativa subsp. jap... [more]
ARP6_ORYSI7.854e-5180.00Actin-related protein 6 OS=Oryza sativa subsp. ind... [more]
ARP6_DICDI6.539e-2658.75Actin-related protein 6 OS=Dictyostelium discoideu... [more]
ARP6_MOUSE9.176e-2140.48Actin-related protein 6 OS=Mus musculus GN=Actr6 P... [more]
ARP6_HUMAN1.194e-2039.29Actin-related protein 6 OS=Homo sapiens GN=ACTR6 P... [more]
ARP6_CHICK3.417e-2041.67Actin-related protein 6 OS=Gallus gallus GN=ACTR6 ... [more]
ACT3_DICDI8.009e-1939.76Actin-3 OS=Dictyostelium discoideum GN=act3 PE=3 S... [more]
ACT_FUCVE2.290e-1836.14Actin OS=Fucus vesiculosus PE=2 SV=1[more]
ACT_FUCDI2.290e-1836.14Actin OS=Fucus distichus PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA
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