DY259800

Overview
NameDY259800
Unique NameDY259800
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1051
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1313 contig Ccv1_Contig1313:1..1051. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259800 vs. ExPASy Swiss-Prot
Match: CLH1_CITUN (Chlorophyllase-1, chloroplastic OS=Citrus unshiu PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 2.283e-33
Identity = 65/115 (56.52%), Postives = 77/115 (66.96%), Query Frame = 3
Query:   18 EPPILSHESFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILYDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDRVD 362
            +P ILS +SF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDIL DNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +FDGD  D
Sbjct:  181 DPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFDGDAED 295          
BLAST of DY259800 vs. ExPASy Swiss-Prot
Match: CLH1_CITSI (Chlorophyllase-1, chloroplastic OS=Citrus sinensis GN=CHLASE1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.524e-32
Identity = 64/115 (55.65%), Postives = 76/115 (66.09%), Query Frame = 3
Query:   18 EPPILSHESFEFSIPXXXXXXXXXXXXKCMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILYDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDRVD 362
            +P ILS +SF+FSIP            +C+  CAPE  NHE+FF RC  S  AHF A DYGHMDIL DNP   K+WA+SK+ C NG + RDPMRRCV+GI  AFLK +F GD  D
Sbjct:  181 DPSILSFDSFDFSIPVTVIGTGLGGVARCITACAPEGANHEEFFNRCKNSSRAHFVATDYGHMDILDDNPSDVKSWALSKYFCKNGNESRDPMRRCVSGIVVAFLKDFFYGDAED 295          
BLAST of DY259800 vs. ExPASy Swiss-Prot
Match: CLH2_ARATH (Chlorophyllase-2, chloroplastic OS=Arabidopsis thaliana GN=CLH2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.538e-13
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 3
Query:  111 PCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILYDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGD 353
            PCAP   NH +FF+ C      HF AKDYGH+D+L D+ +G +  + S  LC NG++ R PMRR V G+  +FLKAY +GD
Sbjct:  215 PCAPPGVNHREFFRECQ-GPAWHFVAKDYGHLDMLDDDTKGIRGKS-SYCLCKNGEERR-PMRRFVGGLVVSFLKAYLEGD 292          
BLAST of DY259800 vs. ExPASy Swiss-Prot
Match: CLH1_ARATH (Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.624e-13
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 3
Query:   18 EPPILSH--ESFEFSIPXXXXXXXXXXXXK-CMQPCAPENKNHEQFFKRCTYSDHAHFDAKDYGHMDILYDNPQGPKNWAISKFLCTNGKKPRDPMRRCVAGIAAAFLKAYFDGDRVD 362
            +P IL++  ESFE  IP               M PCAP + NHE+F+K C  +  AHF A DYGHMD+L D+  G   + ++  +C NG++ +  MR  V GI  AFLK    G++ +
Sbjct:  180 DPHILTYKPESFELDIPVAVVGTGLGPKWNNVMPPCAPTDLNHEEFYKECK-ATKAHFVAADYGHMDMLDDDLPGFVGF-MAGCMCKNGQRKKSEMRSFVGGIVVAFLKYSLWGEKAE 295          
The following BLAST results are available for this feature:
BLAST of DY259800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CLH1_CITUN2.283e-3356.52Chlorophyllase-1, chloroplastic OS=Citrus unshiu P... [more]
CLH1_CITSI2.524e-3255.65Chlorophyllase-1, chloroplastic OS=Citrus sinensis... [more]
CLH2_ARATH1.538e-1349.38Chlorophyllase-2, chloroplastic OS=Arabidopsis tha... [more]
CLH1_ARATH2.624e-1338.98Chlorophyllase-1 OS=Arabidopsis thaliana GN=CLH1 P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YD18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259800 ID=DY259800; Name=DY259800; organism=Citrus clementina; type=EST; length=1051bp
GCGTTCATAGTGATTTTGAACCCCCGATTCTCAGTCATGAATCATTCGAG
TTCTCAATTCCTGTTACTGTAATTGGCACCGGACTCGGTGGTGTGACAAA
GTGCATGCAGCCTTGTGCACCGGAAAACAAAAACCATGAACAATTTTTCA
AGAGGTGTACATATTCAGATCATGCTCATTTTGATGCTAAGGATTATGGT
CACATGGACATTTTATATGATAATCCCCAGGGACCAAAGAATTGGGCAAT
TTCAAAATTTTTGTGCACGAATGGAAAGAAACCAAGGGATCCCATGAGGA
GATGTGTTGCTGGCATTGCTGCGGCTTTTTTGAAGGCCTATTTTGATGGT
GATCGCGTGGATCACACGACACAGTAGACTGGACACCTCACTTGGTACGA
CCAAACTTGACAACATTACCTTCCATCCCCTCACCACCCCTAACGTTTCT
TCCACTACTCCTCTACATTTTTAAACCGGGAACTCTCCAATTTGGCACAT
ATCTCCATTGTACCTAGTTCACATTCTTCGTATCACTGCAACAACATTAA
CTTCAAGCCATATCCAAACTAATAAACTCGGAACTCCTCACACACACCCC
AAAAATCACCACACGACACTCAACACCGCTGGCCACCCTCCACAATTACG
TTCAAACAAAAAGACAAATTTCTCGCTAACATTGACCCTCCCACTCCATA
ACCACTCCGAAACAGCACCCCCTCATACTATCAATAGATATGAACGGAGC
GAAATGCACCCAACAACACAATCAAAAACAGAAAAATGTTTTCTCCTAAT
GCTTTCATAGTTTATACCGTTTTCTACTTATAATACATTGGCATAGCAAT
ATAATCAATATTTAATCACAATCTATACAGTACCTGATTATTTTCTTATA
CATGATCACATAAAAACTGCTTCCAGCGCTGACATAATAAGTTTACCTAA
CAAATACTTCTATATTCACCTGTGCGAGACACTCTAATGATACTACTTCA
TTATAATAGCATTTAAGACTTCTTCTATTACAAAACAATCACATAAACAG
T
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