DY259804

Overview
NameDY259804
Unique NameDY259804
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length857
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1314 contig Ccv1_Contig1314:1..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259804 vs. ExPASy Swiss-Prot
Match: NUDT9_ARATH (Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9 PE=2 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 2.312e-91
Identity = 166/249 (66.67%), Postives = 196/249 (78.71%), Query Frame = 3
Query:  105 SAYKLLLSCPHGFSPSQVSVVFDGSYDRVPPPDTNLENSISEIWDSRVQNNKSLFNGQKFRYGGHIMQGEGGSSVE-SHVCLHLGLTDYRTFVGTNLNPLWEKFLVLSEDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGST--DSEFINQKVSQEMFDSITREVVEEIGVPAESLCNPLFIGISRRRLNVRPAAFFLLKCSLPSNQIPQLYSPAQKG 842
            S Y+LLLSCP G SPSQVSV F  S+DR+P  D  LE+SIS++W+ R Q N SLFNGQKFRYGG+ +  + GS+ E  HVCL LGLTDYRTFVGTNL+ LWEKFLV SEDD ++C+HT+SPLGNGAV+ETSDKKI++L+RSNNVGEFPGH+VFPGGHPEP   GI  H   +     E +N+KV+QEMFDSI  EVVEE G+PA SL +PLFIGISRR LNVRPA FF LKCS  S+ I +LYS A+ G
Sbjct:   13 SRYQLLLSCPSGLSPSQVSVDFSKSHDRIPRQDPGLEDSISQVWEQRSQGNSSLFNGQKFRYGGYCLDDDDGSTNEVPHVCLRLGLTDYRTFVGTNLSSLWEKFLVTSEDDSVRCRHTSSPLGNGAVIETSDKKIIVLRRSNNVGEFPGHYVFPGGHPEPTAVGIDYHQLENNVQTGEVLNKKVTQEMFDSIICEVVEETGIPASSLSSPLFIGISRRELNVRPAMFFYLKCSHHSDDIQRLYSSAEDG 261          
BLAST of DY259804 vs. ExPASy Swiss-Prot
Match: NUD22_RAT (Nucleoside diphosphate-linked moiety X motif 22 OS=Rattus norvegicus GN=Nudt22 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.130e-29
Identity = 87/244 (35.66%), Postives = 127/244 (52.05%), Query Frame = 3
Query:  102 DSAYKLLLSCPHG-FSPSQVSVVFDGSYDRVPPPDTNLENSISEIWDSRVQNNKSLFNGQKFRYGGHIMQGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVLSEDDVIQCQ-HTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINQKVSQEMFDSITREVVEEIGVPAESLCNPLFIGISRRRLNV-RPAAFFLLKCSLPSNQIPQLY 824
            D    L+L CP G  S  QVSV    ++DR P P+   + +I+ IW++R+Q    +F+  KFR     +     SS E  + LHLGLT YR F+GTN +            D    Q + A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ     S P      +   + V +E+F S+ +EV +E+ +P  +L  PL +GI+    +  R +A F ++CSL S ++   Y
Sbjct:    2 DPEVSLMLLCPPGGLSQEQVSVELSPAHDRRPLPEG--DKTITAIWETRLQAQPWIFDAPKFRLHSATL---ASSSPEPQLLLHLGLTSYRDFLGTNWSSSASWLRQQGATDWGDKQAYLADPLGVGAALVTADDFLVFLRRSQQVAEAPGLVDVPGGHPEPQALCSGSIP---QHEDLPGELVVRELFSSVLQEVCDEVNLPLHTLSQPLLLGIACNETSAGRASAEFYVQCSLTSEEVRNYY 237          
BLAST of DY259804 vs. ExPASy Swiss-Prot
Match: NUD22_MOUSE (Nucleoside diphosphate-linked moiety X motif 22 OS=Mus musculus GN=Nudt22 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.783e-28
Identity = 87/247 (35.22%), Postives = 125/247 (50.61%), Query Frame = 3
Query:  102 DSAYKLLLSCP-HGFSPSQVSVVFDGSYDRVPPPDTNLENSISEIWDSRVQNNKSLFNGQKFRYGGHIMQGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVLSEDDVIQCQ-HTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQ---DAGITSHPCGSTDSEFINQKVSQEMFDSITREVVEEIGVPAESLCNPLFIGISRRRLNV-RPAAFFLLKCSLPSNQIPQLY 824
            D    LLL CP  G S  QV+V    ++DR P P    + +I+ IW++R Q    +F+  KFR     +     SS E  + LHLGLT YR F+GTN +            D    Q + A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ     GI  H       +     V +E+F S+ +E+ +E+ +P  +L  PL +GI+    +  R +A F ++CSL S ++   Y
Sbjct:    2 DPEVSLLLLCPLGGLSQEQVAVELSPAHDRRPLPGG--DKAITAIWETRQQAQPWIFDAPKFRLHSATLVS---SSPEPQLLLHLGLTSYRDFLGTNWSSSASWLRQQGAADWGDKQAYLADPLGVGAALVTADDFLVFLRRSQQVAEAPGLVDVPGGHPEPQALCSGGIPRH------KDLPGLLVVRELFSSVLQEICDEVNLPLHTLSQPLLLGIACNETSAGRASAEFYVQCSLTSEEVRSYY 237          
BLAST of DY259804 vs. ExPASy Swiss-Prot
Match: NUD22_HUMAN (Nucleoside diphosphate-linked moiety X motif 22 OS=Homo sapiens GN=NUDT22 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.804e-27
Identity = 85/245 (34.69%), Postives = 124/245 (50.61%), Query Frame = 3
Query:  102 DSAYKLLLSCPHGFSPS-QVSVVFDGSYDRVPPPDTNLENSISEIWDSRVQNNKSLFNGQKFRYGGHIMQGEGGSSVESHVCLHLGLTDYRTFVGTNLNPLWEKFLVLSEDDVIQCQ-HTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTD-SEFINQKVSQEMFDSITREVVEEIGVPAESLCNPLFIGISRRRLNV-RPAAFFLLKCSLPSNQIPQLY 824
            D    LLL CP G  P  Q+      ++DR P P    + +I+ IW++R++    LF+  KFR     +   G    +  + L LGLT YR F+GTN +            D    Q + A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ       P GS    +   Q V  E+F S+ +E+ +E+ +P  +L  PL +GI+R   +  R +A F ++CSL S Q+ + Y
Sbjct:    2 DPEVTLLLQCPGGGLPQEQIQAELSPAHDRRPLPGG--DEAITAIWETRLKAQPWLFDAPKFRLHSATLAPIGSRGPQ--LLLRLGLTSYRDFLGTNWSSSAAWLRQQGATDWGDTQAYLADPLGVGAALATADDFLVFLRRSRQVAEAPGLVDVPGGHPEPQ----ALCPGGSPQHQDLAGQLVVHELFSSVLQEICDEVNLPLLTLSQPLLLGIARNETSAGRASAEFYVQCSLTSEQVRKHY 238          
BLAST of DY259804 vs. ExPASy Swiss-Prot
Match: NUD22_BOVIN (Nucleoside diphosphate-linked moiety X motif 22 OS=Bos taurus GN=NUDT22 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.854e-27
Identity = 86/245 (35.10%), Postives = 123/245 (50.20%), Query Frame = 3
Query:  102 DSAYKLLLSCPHGFSPS-QVSVVFDGSYDRVPPPDTNLENSISEIWDSRVQNNKSLFNGQKFRYGGHIMQGEGGSSVESHVCLHLGLTDYRTFVGTNL--NPLWEKFLVLSEDDVIQCQHTASPLGNGAVVETSDKKILLLQRSNNVGEFPGHFVFPGGHPEPQDAGITSHPCGSTDSEFINQKVSQEMFDSITREVVEEIGVPAESLCNPLFIGISRRRLNV-RPAAFFLLKCSLPSNQIPQLY 824
            D    LLL CP G  P  QV      +YDR P P    + +I  IW+SR+Q    LFN  KFR     +   G    +  + L LGLT Y+ F+GTN   +  W +    ++    Q  + A PLG GA + T+D  ++ L+RS  V E PG    PGGHPEPQ       P      +   + V  E+F S+ +E+ +E+ VP  +L  PL +GI+    +  R +A F ++CSL S Q+ + Y
Sbjct:    2 DPEVSLLLQCPPGGLPEKQVRAELSPAYDRRPLPGG--DKAIIAIWESRLQAQPWLFNAPKFRLHSATLAPTGLPGPQ--LLLRLGLTSYQDFLGTNWASSAAWLRQQGATDWGDKQA-YLADPLGVGAALATADDFLVFLRRSGQVAEAPGLVDVPGGHPEPQALCPGDSP---LHKDLPGELVVHELFSSVLQEICDEVNVPPLTLSQPLLLGIACNETSAGRASAEFYVQCSLTSEQVRRHY 238          
The following BLAST results are available for this feature:
BLAST of DY259804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NUDT9_ARATH2.312e-9166.67Nudix hydrolase 9 OS=Arabidopsis thaliana GN=NUDT9... [more]
NUD22_RAT1.130e-2935.66Nucleoside diphosphate-linked moiety X motif 22 OS... [more]
NUD22_MOUSE2.783e-2835.22Nucleoside diphosphate-linked moiety X motif 22 OS... [more]
NUD22_HUMAN1.804e-2734.69Nucleoside diphosphate-linked moiety X motif 22 OS... [more]
NUD22_BOVIN6.854e-2735.10Nucleoside diphosphate-linked moiety X motif 22 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YD23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259804 ID=DY259804; Name=DY259804; organism=Citrus clementina; type=EST; length=857bp
GAAAGTTTGGAGGATGAGAAAAAGGGCATCTATTAAAGTTTAAAGAGTAA
TTTAATCGACCAGGTGGGTGTGCATTTGGGATTCCAATGGAGCAGCATGC
AGACTCGGCTTACAAGCTTCTTCTCTCGTGTCCACATGGTTTTTCACCAT
CCCAGGTCTCTGTGGTTTTTGATGGATCATATGATAGGGTTCCTCCTCCT
GACACTAACTTAGAGAACTCCATTTCTGAGATATGGGATTCAAGGGTTCA
GAACAACAAGTCCTTGTTTAATGGTCAAAAGTTCAGGTATGGAGGGCATA
TAATGCAAGGTGAAGGTGGATCCAGCGTAGAATCTCATGTGTGCCTCCAT
CTTGGATTGACAGATTATAGGACTTTTGTGGGTACAAACTTGAATCCTTT
GTGGGAGAAGTTTCTGGTTCTATCAGAAGATGATGTGATCCAATGTCAGC
ACACTGCAAGTCCCTTGGGTAATGGTGCAGTGGTAGAGACATCTGACAAG
AAAATACTCTTGTTGCAAAGAAGTAATAATGTTGGCGAATTTCCTGGGCA
CTTTGTCTTTCCAGGAGGCCATCCAGAGCCCCAGGATGCTGGAATTACAT
CTCATCCGTGTGGGTCAACAGACTCTGAGTTTATAAACCAGAAGGTTTCT
CAAGAAATGTTTGACAGCATTACTCGCGAAGTGGTTGAAGAAATTGGAGT
ACCTGCAGAATCTCTTTGCAACCCGCTTTTCATTGGTATATCCCGCAGGC
GTTTGAATGTTAGACCCGCTGCTTTTTTCCTCCTAAAATGCAGTCTTCCG
TCCAACCAAATTCCACAGTTGTATTCTCCCGCACAAAAGGGCATGAATCA
ACCCCAC
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