DY259806

Overview
NameDY259806
Unique NameDY259806
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length956
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1315 contig Ccv1_Contig1315:1..956. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259806 vs. ExPASy Swiss-Prot
Match: ELMOA_DICDI (ELMO domain-containing protein A OS=Dictyostelium discoideum GN=elmoA PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.100e-15
Identity = 51/127 (40.16%), Postives = 69/127 (54.33%), Query Frame = 3
Query:  450 QEERLRYLQQRLEVPFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTDPSTDFRGGGFIFLENLKFFAKKYPDSFRRLLH*QNGTRAEWE*SLAVGWNHIFFML---IQMLGTPSGKP 821
            Q  R + +  R  V F+    EH   L +LW L YPG +L    SE WK+MG+QGTDP TDFR  G   L+NL +FA+ Y + FR++++ Q   R E E   A     + F L   I  +GTP+  P
Sbjct:  362 QRHRFQVITNRKNVTFNKESSEHDALLMKLWSLTYPGVKLESRVSEQWKQMGFQGTDPCTDFRAMGIWGLDNLIYFAQNYNEKFRKIVNSQI-DRKEREYPTATAGIVLTFELYNSIFKMGTPNLNP 487          
BLAST of DY259806 vs. ExPASy Swiss-Prot
Match: ELMOB_DICDI (ELMO domain-containing protein B OS=Dictyostelium discoideum GN=elmoB PE=4 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.661e-11
Identity = 37/132 (28.03%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  351 FGSGSLIGRILPLTSGTQNGIS-EKLFLPSLTSLQEERLRY------LQQRLEVPFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTDPSTDFRGGGFIFLENLKFFAKKYPDSFRRLLH*QN 725
            F  G +  +I+ +    Q  ++ + + LP+L S  E    +      ++++ ++P+D + +EH+ +L++LW    P        S+ W  +G+QG DP+TDFRG G + L+NL +F+ ++ +  R +L   N
Sbjct:   63 FDPGDVAIKIVEIKGFNQELLAFDSIILPNLISALEPISLFQGLKKSIEKKQKIPYDNNNLEHEASLERLWEALLPDVRRSARLSKEWGTLGFQGMDPATDFRGMGILGLDNLIYFSTQHSEDAREILKNSN 194          
BLAST of DY259806 vs. ExPASy Swiss-Prot
Match: ELMD2_HUMAN (ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.244e-11
Identity = 30/78 (38.46%), Postives = 47/78 (60.26%), Query Frame = 3
Query:  492 PFDGSQVEHQDALKQLWRLAYPGRELPPLKSELWKEMGWQGTDPSTDFRGGGFIFLENLKFFAKKYPDSFRRLLH*QN 725
            P+D   ++H++ L +LW L  P ++L    S+ W E+G+QG DP TDFRG G + L NL +F++ Y     ++L   N
Sbjct:  119 PYDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSN 196          
The following BLAST results are available for this feature:
BLAST of DY259806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ELMOA_DICDI1.100e-1540.16ELMO domain-containing protein A OS=Dictyostelium ... [more]
ELMOB_DICDI3.661e-1128.03ELMO domain-containing protein B OS=Dictyostelium ... [more]
ELMD2_HUMAN6.244e-1138.46ELMO domain-containing protein 2 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YE03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259806 ID=DY259806; Name=DY259806; organism=Citrus clementina; type=EST; length=956bp
CAATTCTTGAATCTGCAATTTGGGAGCTCCTCGAGTTGCAGGCCCAGCAA
TTTCTTTCTACCCCAAATTTACCTCTTTTCTTGGTTTAATTAATGACATC
AAAAACTTTGAGGCGGCGGCTCCATCATGAAGATGTTGGTGGAAGAGGGA
ATGAGCGTCTGGAGTCATCTGGGTATGATGGCTTGAGTGAGCCTTTGTTA
GCTAATTATCAAGATGGTGATCAGAGCCGTTCTGAGGGACACAGAGCAGA
AGATCTTTGGGATGATGAGGAGAAGAAGGCACGCTTGCATTGGATGTTTA
TTTTCTCTCAGTTGATCACACAATGGGCGCAATGGTTAGCTAATATTGTA
TTTGGATCTGGGTCACTTATTGGCAGAATTTTGCCTCTAACTTCTGGCAC
CCAAAACGGAATAAGCGAGAAGCTTTTCCTACCTTCTCTTACTTCTTTAC
AGGAAGAAAGGCTTAGATATTTACAACAGAGGCTGGAAGTCCCCTTCGAT
GGATCACAAGTAGAGCATCAAGATGCACTTAAACAGCTATGGAGGTTAGC
TTATCCTGGTAGAGAGTTGCCACCTCTGAAATCGGAGCTCTGGAAAGAAA
TGGGATGGCAAGGGACAGACCCTTCAACTGATTTTCGGGGTGGAGGATTT
ATATTCCTGGAGAATCTTAAATTTTTCGCTAAGAAATACCCGGACTCTTT
TCGAAGATTGTTACACTAACAAAACGGAACAAGAGCAGAATGGGAATAAT
CCCTTGCTGTTGGCTGGAATCACATTTTTTTTATGTTAATCCAGATGTTG
GGAACTCCATCCGGAAAGCCACCTCCTTTCACTGGTATCCCCCTTTCTAA
AATTGTTGAAAAAACACAAATGGGCATCCTACAAACCTATATGGCTTACC
TTTTGAAAGAGGGAGGCCCCAGGGGCTTGGAAACCGGCCAGAAATTAGGG
AATTTA
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