DY259813

Overview
NameDY259813
Unique NameDY259813
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length979
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1318 contig Ccv1_Contig1318:1..979. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: METC_COXBU (Cystathionine beta-lyase OS=Coxiella burnetii GN=metC PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.264e-14
Identity = 39/111 (35.14%), Postives = 69/111 (62.16%), Query Frame = 1
Query:    1 HVVSFRTLHGGTHALRTHFFPRACNITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSLSKFIS 330
            HVV    ++GG++ L  +   R+  ++ +FVD TD   V  A+   +TK+L+ ES SNP L + ++ +++ +A +K +  V DNTF +P++  P  LG D+V HS +K+++
Sbjct:   98 HVVVMDDVYGGSYRLFENVRKRSAGLSFSFVDFTDENKVREAVT-AKTKMLWVESPSNPRLKIVDLAKIAEIAKEKNIIAVADNTFATPIIQRPLELGFDIVTHSATKYLN 207          
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: METC_BACSU (Cystathionine beta-lyase metC OS=Bacillus subtilis GN=metC PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.826e-13
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 HVVSFRTLHGGTHALRTHFFPRACNITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSLSKFIS 330
            HV+    ++GGT  + T    R   I  TFVD+TD   V  +I +  TKV+Y E+ SNPTL + +I  + +LA + G    +DNTF +P +  P  LG D+V+HS +KF+S
Sbjct:   95 HVLVTEDVYGGTFRMVTEVLTRF-GIEHTFVDMTDRNEVARSI-KPNTKVIYMETPSNPTLGITDIKAVVQLAKENGCLTFLDNTFMTPALQRPLDLGVDIVLHSATKFLS 203          
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: CYSD_EMENI (O-acetylhomoserine (thiol)-lyase OS=Emericella nidulans GN=cysD PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 4.067e-13
Identity = 46/111 (41.44%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 HVVSFRTLHGGTHALRTHFFPRACNITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTFSP--LVLSPARLGADVVVHSLSKFI 327
            ++VS   L+GGT+      FPR   ITT FV     E + +AI   RTK +Y E+I NP   V +   ++++AH+KG+ +VVDNTF      + P   GAD+VVHS +K+I
Sbjct:  105 NIVSTSNLYGGTYNQFKVLFPRL-GITTKFVQGDKAEDIAAAI-DDRTKAVYVETIGNPRYNVPDFEVIAKVAHEKGIPLVVDNTFGAGGYFVRPIEHGADIVVHSATKWI 213          
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: MCCB_BACSU (Cystathionine gamma-lyase OS=Bacillus subtilis GN=mccB PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.183e-12
Identity = 42/110 (38.18%), Postives = 66/110 (60.00%), Query Frame = 1
Query:    1 HVVSFRTLHGGTHALRTHFFPRACNITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSLSKFI 327
            HVV    ++GGT+ + T    R   I +TFVD +  E V  AI +  TK +Y E+ +NP L + ++  ++ +A   GV ++VDNTF +P    P  LGAD+V+HS +K++
Sbjct:   90 HVVLTDDVYGGTYRVMTKVLNRL-GIESTFVDTSSREEVEKAI-RPNTKAIYIETPTNPLLKITDLTLMADIAKKAGVLLIVDNTFNTPYFQQPLTLGADIVLHSATKYL 197          
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: METB_MYCTU (Cystathionine gamma-synthase OS=Mycobacterium tuberculosis GN=metB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.018e-12
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 HVVSFRTLHGGTHALRTHFFPRACNITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSLSKFI 327
            HVV     +GGT  L    F R  ++  T V + D + V +AI   RT++++ E+ +NP L++A+I  ++ L  D+   V+VDNTF SP +  P RLGADVV+HS +K+I
Sbjct:  103 HVVIPDDAYGGTFRLIDKVFTR-WDVQYTPVRLADLDAVGAAITP-RTRLIWVETPTNPLLSIADITAIAELGTDRSAKVLVDNTFASPALQQPLRLGADVVLHSTTKYI 210          
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: METB_MYCBO (Cystathionine gamma-synthase OS=Mycobacterium bovis GN=metB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.018e-12
Identity = 45/110 (40.91%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 HVVSFRTLHGGTHALRTHFFPRACNITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSLSKFI 327
            HVV     +GGT  L    F R  ++  T V + D + V +AI   RT++++ E+ +NP L++A+I  ++ L  D+   V+VDNTF SP +  P RLGADVV+HS +K+I
Sbjct:  103 HVVIPDDAYGGTFRLIDKVFTR-WDVQYTPVRLADLDAVGAAITP-RTRLIWVETPTNPLLSIADITAIAELGTDRSAKVLVDNTFASPALQQPLRLGADVVLHSTTKYI 210          
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: CGL_DICDI (Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.670e-12
Identity = 42/112 (37.50%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    4 VVSFRTLHGGTHALRTHFFPRACN--ITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSLSKFIS 330
            V+S   ++GGT   R +F   A N  +  +FVD++  + + +A    +T++++ E+ +NP L VA+I  ++   H +G T+VVDNTF SP   +P  LGAD+V+HS++K+I+
Sbjct:   98 VISIDDVYGGT---RRYFTRVAANFDLKFSFVDLSTLDDLKNAFTD-KTRLVWIETPTNPLLKVADIKAVADYVHSRGATLVVDNTFMSPYFQNPLDLGADIVMHSVTKYIN 205          
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: METB_MYCLE (Cystathionine gamma-synthase OS=Mycobacterium leprae GN=metB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.002e-11
Identity = 43/110 (39.09%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 HVVSFRTLHGGTHALRTHFFPRACNITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSLSKFI 327
            HV+    ++GGT  L    F +  N+  T V ++D + V +AI   RT++++ E+ +NP L++A+I  +  L     V V+VDNTF SP +  P  LGADVV+HS +K+I
Sbjct:  103 HVIIPDDVYGGTFRLIDKVFTQ-WNVDYTPVPLSDLDAVRAAITS-RTRLIWVETPTNPLLSIADITSIGELGKKHSVKVLVDNTFASPALQQPLMLGADVVLHSTTKYI 210          
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: MEGL_PSEPU (Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.002e-11
Identity = 41/105 (39.05%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   19 TLHGGTHALRTHFFPRACNITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSLSKFIS 330
            TL+G T A   H       +    VD+ D + + +A+    T+V+YFES +NP + +A+I  ++++A   G TVVVDNT+ +P +  P  LGAD+VVHS +K++S
Sbjct:  112 TLYGCTFAFLHHGIGEF-GVKLRHVDMADLQALEAAMTPA-TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLELGADLVVHSATKYLS 214          
BLAST of DY259813 vs. ExPASy Swiss-Prot
Match: METB_HERAU (Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.709e-11
Identity = 40/110 (36.36%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    1 HVVSFRTLHGGTHALRTHFFPRACNITTTFVDITDHEMVNSAIVQGRTKVLYFESISNPTLAVANIPELSRLAHDKGVTVVVDNTF-SPLVLSPARLGADVVVHSLSKFI 327
            HV+    ++GGT+ L          ++  F+D+ D E V +AI +  T++++ E+ +NP L +A I  ++R+A + G+  +VDNTF SP    P  LGAD+V+HS +K+I
Sbjct:   92 HVICGDDVYGGTYRLFQRVMTEH-GLSFDFIDMADPEAVRAAI-KPNTRLIWLETPTNPLLKLAPIAAITRVAREHGIWTIVDNTFASPYNQRPITLGADMVLHSTTKYI 199          
The following BLAST results are available for this feature:
BLAST of DY259813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
METC_COXBU1.264e-1435.14Cystathionine beta-lyase OS=Coxiella burnetii GN=m... [more]
METC_BACSU1.826e-1340.54Cystathionine beta-lyase metC OS=Bacillus subtilis... [more]
CYSD_EMENI4.067e-1341.44O-acetylhomoserine (thiol)-lyase OS=Emericella nid... [more]
MCCB_BACSU1.183e-1238.18Cystathionine gamma-lyase OS=Bacillus subtilis GN=... [more]
METB_MYCTU2.018e-1240.91Cystathionine gamma-synthase OS=Mycobacterium tube... [more]
METB_MYCBO2.018e-1240.91Cystathionine gamma-synthase OS=Mycobacterium bovi... [more]
CGL_DICDI7.670e-1237.50Cystathionine gamma-lyase OS=Dictyostelium discoid... [more]
METB_MYCLE1.002e-1139.09Cystathionine gamma-synthase OS=Mycobacterium lepr... [more]
MEGL_PSEPU1.002e-1139.05Methionine gamma-lyase OS=Pseudomonas putida GN=md... [more]
METB_HERAU1.709e-1136.36Probable cystathionine gamma-synthase (Fragment) O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YE11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259813 ID=DY259813; Name=DY259813; organism=Citrus clementina; type=EST; length=979bp
CACGTGGTGTCCTTTCGGACACTCCACGGCGGGACTCATGCTTTGCGGAC
CCACTTTTTCCCGAGGGCTTGCAACATAACGACAACTTTCGTCGACATCA
CCGATCACGAGATGGTGAATAGTGCAATTGTTCAAGGAAGGACAAAGGTG
CTGTACTTTGAATCCATCTCTAACCCTACGCTCGCCGTGGCTAATATCCC
CGAGCTGAGCCGTTTGGCTCACGATAAGGGAGTTACCGTCGTGGTGGATA
ACACATTTTCTCCACTGGTTCTGTCGCCGGCTCGGCTCGGAGCTGATGTC
GTTGTGCACAGCCTCTCCAAGTTTATCAGTGGTGGGGCCGATATCATTGC
AGGTGCTGATTGAGGGCCACCCAATCCTGTGAACTCCATGAGGGACATTC
ACATACGAGCCGTCGATGCAGGTGGTCAAGACCATGAATCCAAAGGTTAC
TTGTTGAGTAACACAAAATAATCAACCTTGGGCCTGATATAATAGTAGCT
TTCCCATCGCGTTTCACTTTTGGCAAACGATCATAAAACTGTCTCTACAC
CTCACACCTGCAACTATAAAAAACCAAAACCACAGGTGATATATATGAAT
CATGAACGTTCAGAATAAACCACACCTCCTCCACCTTCCACTCCCTTCGC
TCCGCACTCCCTCTCTCATCCACTCCTTTCACATCACTATTCATCCTTTC
CCACAAAGACAATCCTACAACGCCCCCCTACCCCCCCTCCCACACCTCCC
AAACCATATACAACCGCAATGAAATACAATTAAAGTTACAATATATATGA
TTAAACAAATCAATAAACCACACACTACTAGATGATACTCGAAGCTCTTT
GTCTACATTCTTTGCACTATCCATTGAATCATATCTACCTAGATTAGACA
CGCTCCACAAAACTCGCTAACAATACAACTAAGCCAGCTAATCCAACACA
AACTATAACTCCTCTAGAATAACACAAAC
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