DY259820

Overview
NameDY259820
Unique NameDY259820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1289
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.327e-23
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 1
Query:   94 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKKPP 264
            AAEEGQVIGCHTVEAWNEQLQK N+TK L+VVDFTASWCGPC FIAPFLAEL KK P
Sbjct:    2 AAEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLP 58          
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.735e-21
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = 1
Query:   94 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKKPP 264
            A+EEGQVI CHTVE WNEQLQK+NE+K LVVVDFTASWCGPC FIAPF A+L KK P
Sbjct:    2 ASEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP 58          
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.004e-18
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1
Query:   85 EMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKKPPY 267
            +  ++EEGQV GCH VE WNE  +K  ETK+LVVVDFTASWCGPC FIAP LA++ KK P+
Sbjct:    5 DATSSEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPH 65          
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.365e-17
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 1
Query:   97 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKKPP 264
            AEEGQVIG HTV+AWNE LQK  + K+L+VVDFTASWCGPC FIA F AEL KK P
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMP 57          
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.180e-15
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   97 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKKPPY 267
            AEE QVI CHTV+ WNE+ QK+ ++ +L+V+DFTASWCGPC  I P+++EL KK P+
Sbjct:    2 AEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPH 58          
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.718e-15
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   97 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKK 258
            A EG+VI CHT+E WNE+++ +NE+K+L+V+DFTASWC PC FIAP  AE+ KK
Sbjct:    2 AGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKK 55          
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.413e-14
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   97 AEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKK 258
            A EG+VI CHTVE W E+L+ +NE+K+L+V+DFTA+WC PC FIAP  A+L KK
Sbjct:    2 AAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKK 55          
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 7.012e-14
Identity = 34/55 (61.82%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   94 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKK 258
            AAEEGQVIGCHT + W  QL K+ E+ +L+V+DFTASWC PC  IAP   +L KK
Sbjct:    2 AAEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKK 56          
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 3.480e-13
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   94 AAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKK 258
            AAEEGQVIGCH ++ W  QL  + ++ +L+V+DFTASWC PC  IAP  A+L KK
Sbjct:    2 AAEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKK 56          
BLAST of DY259820 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.256e-12
Identity = 32/61 (52.46%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   82 AEMAAAEEGQVIGCHTVEAWNEQLQKSNETKQLVVVDFTASWCGPCLFIAPFLAELDKKPP 264
            A  AA   G+VI  H++E W  Q++++N  K+LVV+DFTASWCGPC  +AP  A+L KK P
Sbjct:   10 ATAAAVGAGEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFP 70          
The following BLAST results are available for this feature:
BLAST of DY259820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
TRXH_RICCO6.327e-2387.72Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH7.735e-2180.70Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC8.004e-1865.57Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH2_TOBAC1.365e-1775.00Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_FAGES2.180e-1559.65Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH3.718e-1562.96Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH1.413e-1462.96Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH7.012e-1461.82Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA3.480e-1358.18Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_WHEAT2.256e-1252.46Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259820 ID=DY259820; Name=DY259820; organism=Citrus clementina; type=EST; length=1289bp
CGCAAATCACCAACATTAAGAAAGCGAGGGAGAGAATAGAAGTATCGTTG
GGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAATGGCAGCAGCAG
AAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCTGGAACGAGCAG
CTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTTGATTTCACTGC
TTCCTGGTGCGGACCATGCCTTTTCATTGCTCCTTTCTTGGCAGAGCTGG
ACAAGAAACCGCCCTACTGTCCTGTTTGTGAAGGATGACGTGTGTTCACT
GGAGAGGTGTGGATTTCGACGATCCGGCGGACCGAACGCCTAGATATCCC
CCCCCGGCCACCGGAGACCTTGCTTGATCCTCTGATCCCGCCCTCCGTGG
GCTCACTGCTATTCAACCCTTCTGCCCCCTCCGAGTCCTTCCCACTCCCA
CCAGGCGCACCCGACACTGGAACGCTGCGTAACCATGCCCTCGACCCCAG
CTTCCTTGAGTAAGCAAACCCGCGACGTGCAGGATTTCCGCACCCCGTCG
ACCGCACTTGGCCCCTCACTTCCGATTATTCCTTTCCGTCTCTCACTCTC
TCAACTCAGACGCTACCTTCCCCTGCACCTCTACCCCCACCTCCTACCGG
CTCCCCCATCAAACCTTCTAAATCCTACTCTGCTCCCTCATACCTCCGCG
CATCAGTCAGGCGTTGATGAAGATCTGAACGCCACCCGACATGCCCCCTC
ATTAAACGAAATCCCATCGACTCCGCACAACGTCACCTACAACACCACAT
TTCCTCGCCACCCTACCCTCACCCCCACTCTAGCTACAGATCCGGACATC
CTACGTCATCTTATCTACAAGACTTATTCTTACCTTCGACGGCAGACGCC
GTCTCTTTCCCTCCTGATTCCTGTTCCCCTCTCGCTCATTTCTAATTTCT
CCCCACGCAAAGTGATCTCTCGCAATAAATCTACGTCCCCCGCACAAAAC
AAACCACACCGAGCCCCCCTCACAAAACAACAAAATCAAAGACAACTATA
AATCTAGAACGACCATCATTCCCCTAGCTTACTTCCCTTTAACAAATTTC
TTCGACAAGATGTATACACCACCCTCCTCGACCCCACACCATCTTTACCT
GTACGTCCCTCCCTGTGCTAACTATCCGTCGATTACGCGTTACTACTAAG
ACTTTAACCTAACTGCTTCAACTATCATATACATATCAGTCCTCCCCAGC
TCATCTCCCACCTGGTATCATACTCCACTATACCCTACT
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