DY259829

Overview
NameDY259829
Unique NameDY259829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1092
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 410.994 bits (1055), Expect = 6.251e-114
Identity = 195/227 (85.90%), Postives = 207/227 (91.19%), Query Frame = 1
Query:    1 APVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFLP 681
            APVAGYHWFDGDGMIHGLRIKDGKATYVSRFV TSRLKQEE+FG +KFMKIGDLKGLFGLLMVN+ MLR KLKVLD+SYG GT NTALVYHHGKLLALSEADKPYA+KV EDGDLQTLGM+DYDKRL HSFTAHPKVDP+TGEMF+FGYAHTPPYITYRVISKDG+MHDPVPITISDPI+MH FAITENYA+FMDLPL FRPKEMV     IF+F  TKK  FG LP
Sbjct:   91 APVAGYHWFDGDGMIHGLRIKDGKATYVSRFVETSRLKQEEYFGRSKFMKIGDLKGLFGLLMVNIHMLRTKLKVLDLSYGGGTTNTALVYHHGKLLALSEADKPYAIKVFEDGDLQTLGMLDYDKRLGHSFTAHPKVDPFTGEMFSFGYAHTPPYITYRVISKDGYMHDPVPITISDPIMMHDFAITENYAVFMDLPLIFRPKEMVKNKTLIFSFDSTKKARFGVLP 317          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: CCD1_PEA (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Pisum sativum GN=CCD1 PE=2 SV=1)

HSP 1 Score: 407.142 bits (1045), Expect = 9.026e-113
Identity = 191/227 (84.14%), Postives = 208/227 (91.63%), Query Frame = 1
Query:    1 APVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFLP 681
            +PVAGYHWFDGDGMIHGLRIKDGKA+YVSRFV+TSR KQEE+F G+KFMKIGDLKGLFGLLMVNMQMLRAKLK+LDVSYG+GTANTALVYHH KLLALSE DKPYA+KV EDGDLQTLGM+DYDKRL H+FTAHPKVDP+TGEMFTFGY+HT PY+TYRVISKDGFM DPVPITISDP++MH FAITENY+IFMDLPLYFRPKEMV     IF+F  TKK  FG LP
Sbjct:   89 SPVAGYHWFDGDGMIHGLRIKDGKASYVSRFVKTSRFKQEEYFNGSKFMKIGDLKGLFGLLMVNMQMLRAKLKILDVSYGHGTANTALVYHHQKLLALSEGDKPYAIKVFEDGDLQTLGMLDYDKRLGHNFTAHPKVDPFTGEMFTFGYSHTAPYVTYRVISKDGFMQDPVPITISDPVMMHDFAITENYSIFMDLPLYFRPKEMVKNKTLIFSFDSTKKARFGVLP 315          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 398.667 bits (1023), Expect = 3.210e-110
Identity = 187/225 (83.11%), Postives = 204/225 (90.67%), Query Frame = 1
Query:    7 VAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFLP 681
            VAGYHWFDGDGMIHG+RIKDGKATYVSR+V+TSRLKQEEFFG AKFMKIGDLKG FGLLMVN+Q LR KLK+LD +YGNGTANTALVYHHGKLLAL EADKPY +KVLEDGDLQTLG+IDYDKRL HSFTAHPKVDP TGEMFTFGY+HTPPY+TYRVISKDG MHDPVPITIS+PI+MH FAITE YAIFMDLP++FRPKEMV +   I++F  TKK  FG LP
Sbjct:   91 VAGYHWFDGDGMIHGVRIKDGKATYVSRYVKTSRLKQEEFFGAAKFMKIGDLKGFFGLLMVNVQQLRTKLKILDNTYGNGTANTALVYHHGKLLALQEADKPYVIKVLEDGDLQTLGIIDYDKRLTHSFTAHPKVDPVTGEMFTFGYSHTPPYLTYRVISKDGIMHDPVPITISEPIMMHDFAITETYAIFMDLPMHFRPKEMVKEKKMIYSFDPTKKARFGVLP 315          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: CCD_CROSA (Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1)

HSP 1 Score: 388.267 bits (996), Expect = 4.339e-107
Identity = 183/226 (80.97%), Postives = 199/226 (88.05%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMKIGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGYAHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFLP 681
            PVAGYHWFDGDGMIHG+RIKDGKATY SR+V+TSRLKQEE+F G KFMKIGDLKG FGL MV MQ+LRAKLKV+DVSYG GT NTAL+YHHGKLLALSEADKPY VKVLEDGDLQTLG++DYDKRL HSFTAHPKVDP+T EMFTFGYAHTPPY+TYRVISKDG M DPVPITI   ++MH FAITENY+IFMDLPLYF+PKEMV     IF+F  TKK  FG LP
Sbjct:   94 PVAGYHWFDGDGMIHGMRIKDGKATYASRYVKTSRLKQEEYFEGPKFMKIGDLKGFFGLFMVQMQLLRAKLKVIDVSYGVGTGNTALIYHHGKLLALSEADKPYVVKVLEDGDLQTLGLLDYDKRLSHSFTAHPKVDPFTDEMFTFGYAHTPPYVTYRVISKDGVMRDPVPITIPASVMMHDFAITENYSIFMDLPLYFQPKEMVKGGKLIFSFDATKKARFGVLP 319          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: NCED3_ARATH (9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.616e-45
Identity = 95/242 (39.26%), Postives = 143/242 (59.09%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFLPPMQTNRAN*KGLNS 723
            PV G+H+FDGDGM+H ++ + G A+Y  RF +T+R  QE   G   F K IG+L G  G+  + +   RA   ++D ++G G AN  LVY +G+LLA+SE D PY V++  +GDL+T+G  D+D +L+ +  AHPKVDP +GE+F   Y   + PY+ Y   S DG     V I +  P +MH FAITEN+ +  D  + F+  EM+ +  S   + + K   FG L     + +N K +++
Sbjct:  164 PVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAIGELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSYDVVSKPYLKYFRFSPDGTKSPDVEIQLDQPTMMHDFAITENFVVVPDQQVVFKLPEMI-RGGSPVVYDKNKVARFGILDKYAEDSSNIKWIDA 404          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: NCED1_MAIZE (9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 6.168e-45
Identity = 101/229 (44.10%), Postives = 137/229 (59.83%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKA-TYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFLP 681
            PVAG+H FDGDGM+H LRI++G A +Y  RF  T+RL+QE   G   F K IG+L G  G+  + +   RA   ++D S G G AN  LVY +G+LLA+SE D PY V+V +DGDL+T+G  D+D +L  +  AHPK+DP TGE+    Y     PY+ Y     DG   D V I +  P ++H FAITEN  +  D  + F+ +EM+   + +   KE K   FG LP
Sbjct:  164 PVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDKE-KTSRFGVLP 391          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: NCED9_ARATH (9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 7.539e-43
Identity = 95/227 (41.85%), Postives = 131/227 (57.71%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFL 678
            PV+G+H FDGDGM+H +R  +G  +Y  RF  T+RL QE   G   F K IG+L G  G+  + +   R    ++D + G G AN  LVY +G LLA+SE D PY VKV + GDL+T G  D+D +L+ +  AHPK+DP T E+F   Y   + PY+ Y   + DG     V I +  P ++H FAITEN+ +  D  + FR  EM+ +  S   + E KK  FG L
Sbjct:  224 PVSGHHLFDGDGMVHAVRFDNGSVSYACRFTETNRLVQERECGRPVFPKAIGELHGHLGIAKLMLFNTRGLFGLVDPTGGLGVANAGLVYFNGHLLAMSEDDLPYHVKVTQTGDLETSGRYDFDGQLKSTMIAHPKIDPETRELFALSYDVVSKPYLKYFRFTSDGEKSPDVEIPLDQPTMIHDFAITENFVVIPDQQVVFRLPEMI-RGGSPVVYDEKKKSRFGIL 449          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: NCED5_ARATH (Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 6.383e-42
Identity = 93/228 (40.79%), Postives = 130/228 (57.02%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFLP 681
            PV+G+H FDGDGM+H ++I +G A+Y  RF  T RL QE+  G   F K IG+L G  G+  + +   R    +L+   G G AN  LVY H +LLA+SE D PY V+V ++GDL+T+G  D+D +L  +  AHPK+DP T E+F   Y     PY+ Y   S +G     V I ++ P +MH FAITEN+ +  D  + F+  +M     S   +   K   FG LP
Sbjct:  154 PVSGHHLFDGDGMVHAVKITNGDASYSCRFTETERLVQEKQLGSPIFPKAIGELHGHSGIARLMLFYARGLFGLLNHKNGTGVANAGLVYFHDRLLAMSEDDLPYQVRVTDNGDLETIGRFDFDGQLSSAMIAHPKIDPVTKELFALSYDVVKKPYLKYFKFSPEGEKSPDVEIPLASPTMMHDFAITENFVVIPDQQVVFKLSDMF-LGKSPVKYDGEKISRFGILP 380          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: NCED1_PHAVU (9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 1.089e-41
Identity = 89/227 (39.21%), Postives = 132/227 (58.15%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFL 678
            PVAG+H+FDGDGM+H ++  +G A+Y  RF  T RL QE+  G   F K IG+L G  G+  + +   R+  +++D S+G G AN  LVY +  LLA+SE D PY V++  +GDL T+G  D++ +L  +  AHPK+DP  G++    Y     PY+ Y   S DG     V I + +P +MH FAITEN+ +  D  + F+  EM+   + +  + + K   FG L
Sbjct:  183 PVAGHHFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLLFYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNGQLNSTMIAHPKLDPVNGDLHALSYDVVQKPYLKYFRFSADGVKSPDVEIPLKEPTMMHDFAITENFVVVPDQQVVFKLTEMITGGSPV-VYDKNKTSRFGIL 408          
BLAST of DY259829 vs. ExPASy Swiss-Prot
Match: NCED2_ARATH (9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 3.502e-40
Identity = 91/242 (37.60%), Postives = 135/242 (55.79%), Query Frame = 1
Query:    4 PVAGYHWFDGDGMIHGLRIKDGKATYVSRFVRTSRLKQEEFFGGAKFMK-IGDLKGLFGLLMVNMQMLRAKLKVLDVSYGNGTANTALVYHHGKLLALSEADKPYAVKVLEDGDLQTLGMIDYDKRLQHSFTAHPKVDPYTGEMFTFGY-AHTPPYITYRVISKDGFMHDPVPITISDPILMHHFAITENYAIFMDLPLYFRPKEMVNKNNSIFTFKETKKPPFGFLPPMQTNRAN*KGLNS 723
            P AG+H FDGDGM+H ++I +G A+Y  RF +T RL QE+  G   F K IG+L G  G+  + +   R    +++   G G AN  LVY + +LLA+SE D PY +K+ + GDLQT+G  D+D +L+ +  AHPK+DP T E+    Y     PY+ Y   S DG     + I +  P ++H FAITEN+ +  D  + F+  EM++  + +  F   K    G +P   T  +    +NS
Sbjct:  147 PTAGHHLFDGDGMVHAVKITNGSASYACRFTKTERLVQEKRLGRPVFPKAIGELHGHSGIARLMLFYARGLCGLINNQNGVGVANAGLVYFNNRLLAMSEDDLPYQLKITQTGDLQTVGRYDFDGQLKSAMIAHPKLDPVTKELHALSYDVVKKPYLKYFRFSPDGVKSPELEIPLETPTMIHDFAITENFVVIPDQQVVFKLGEMISGKSPV-VFDGEKVSRLGIMPKDATEASQIIWVNS 387          
The following BLAST results are available for this feature:
BLAST of DY259829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CCD1_PHAVU6.251e-11485.90Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_PEA9.026e-11384.14Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH3.210e-11083.11Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD_CROSA4.339e-10780.97Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Cr... [more]
NCED3_ARATH3.616e-4539.269-cis-epoxycarotenoid dioxygenase NCED3, chloropla... [more]
NCED1_MAIZE6.168e-4544.109-cis-epoxycarotenoid dioxygenase 1, chloroplastic... [more]
NCED9_ARATH7.539e-4341.859-cis-epoxycarotenoid dioxygenase NCED9, chloropla... [more]
NCED5_ARATH6.383e-4240.79Probable 9-cis-epoxycarotenoid dioxygenase NCED5, ... [more]
NCED1_PHAVU1.089e-4139.219-cis-epoxycarotenoid dioxygenase NCED1, chloropla... [more]
NCED2_ARATH3.502e-4037.609-cis-epoxycarotenoid dioxygenase NCED2, chloropla... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259829 ID=DY259829; Name=DY259829; organism=Citrus clementina; type=EST; length=1092bp
GCCCCTGTGGCCGGATACCACTGGTTTGATGGAGATGGCATGATTCATGG
TCTGCGCATCAAAGACGGAAAGGCTACATATGTCTCCCGTTTTGTGAGGA
CTTCACGTCTTAAACAGGAAGAATTTTTTGGAGGTGCTAAATTTATGAAG
ATTGGAGACCTTAAGGGGCTATTTGGATTACTCATGGTTAACATGCAAAT
GCTTAGAGCAAAGTTGAAAGTACTGGATGTTTCATATGGAAATGGGACAG
CTAATACAGCTCTTGTATATCACCATGGGAAACTTCTAGCACTCTCAGAG
GCGGACAAACCATATGCCGTCAAAGTTCTGGAAGATGGAGATCTGCAAAC
ACTTGGTATGATTGACTATGACAAGAGATTACAACATTCCTTTACTGCCC
ATCCAAAGGTTGATCCATACACTGGCGAGATGTTTACCTTTGGCTATGCA
CACACACCACCATATATCACATACAGAGTTATTTCAAAGGATGGTTTCAT
GCATGATCCTGTACCAATAACCATATCAGACCCCATCTTGATGCACCACT
TTGCTATTACTGAGAATTATGCTATTTTCATGGATCTTCCCCTGTATTTC
AGACCAAAAGAAATGGTGAACAAAAACAACTCGATATTCACTTTTAAAGA
AACAAAAAAACCCCCTTTTGGTTTCCTTCCCCCAATGCAAACAAATAGGG
CCAACTGAAAGGGTTTGAACTCTCACAATTCCTTACACTCCCAAAACCCC
AAGCTTGCGAAGCGGCCGATTACTGCGTTTTCAATCTTTTCCGCCATTTC
ACAGCGGATCCAAATACTTCCCTATGCCCCTCTCTACTCACCCCCCACAC
CTTCCCCCCACTAACTCCCCGCAACTCCACCCCCTCCCCAATCACGCTCC
CCCCCACCCAACCACAATACCACACACCCTCAACATCCATCTCCTATCTA
CACCAAGATACCAAACAATGCACCAACACAATCAATCTCGACATAACACA
ATTTCCCCATCACAATAACCCATCCATATGCCTTCCACTCCCAACATTCT
TCCTTGCTCCACCTTCCACCTCCCTATACCCCCCTCTCTCGC
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