DY259831

Overview
NameDY259831
Unique NameDY259831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1017
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259831_ssr387 microsatellite DY259831_ssr387:387..396. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.702e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 2
Query:   92 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 247
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.702e-20
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 2
Query:   92 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 247
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLLLT LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.787e-19
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 2
Query:   77 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 247
            MAD STATC+DI+LA+ILPPLGVF KFGC  EFWICLLLT  GY+PGIIYAV+ ITK
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.868e-19
Identity = 41/53 (77.36%), Postives = 49/53 (92.45%), Query Frame = 2
Query:   89 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 247
            STAT V+I+LA+ILPPLGVFLKFGCK EFWICL+LT+ GY+PGI+YA+Y ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.513e-18
Identity = 40/53 (75.47%), Postives = 49/53 (92.45%), Query Frame = 2
Query:   89 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 247
            STAT VDI++A++LPPLGVFL+FGC  EFWICL+LT+LGYIPGIIYA+Y +TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.554e-15
Identity = 40/56 (71.43%), Postives = 46/56 (82.14%), Query Frame = 2
Query:   77 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLLTILGYIPGIIYAVYAI 241
            MA G   T ++ILLA+ILPPLGVFL+FGC   EF ICLLLTILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.554e-15
Identity = 34/51 (66.67%), Postives = 46/51 (90.20%), Query Frame = 2
Query:   89 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 241
            ++AT ++++LA+ILPP+GVFL++G   EFWICLLLT+LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.035e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:   92 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 241
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.035e-14
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2
Query:   92 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAI 241
            +AT ++++LA+ILPP+GVFL++    EFWICLLLTILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DY259831 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.713e-12
Identity = 34/53 (64.15%), Postives = 43/53 (81.13%), Query Frame = 2
Query:   98 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLLTILGYIPGIIYAVYAITK 247
            TC DI   ++A+ILPPLGVFL+ GC + FWI ++LTILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56          
The following BLAST results are available for this feature:
BLAST of DY259831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
LTI6B_ORYSJ4.702e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI4.702e-2084.62Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ1.787e-1978.95Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH8.868e-1977.36Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH1.513e-1875.47Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ4.554e-1571.43Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT02_HORVU4.554e-1566.67Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU5.035e-1468.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL5.035e-1468.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA4.713e-1264.15Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YF08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259831 ID=DY259831; Name=DY259831; organism=Citrus clementina; type=EST; length=1017bp
CTTTAATCAAAGTTCTTGTTTTTTGACTCTAAATTTTATTTTATTCCATT
TTACACTTTTTAAGAATCAATCAAAGATGGCAGATGGAAGCACAGCAACA
TGCGTAGATATTCTCTTGGCTGTTATCTTGCCTCCTCTTGGTGTCTTTCT
CAAATTTGGTTGCAAGGCTGAGTTTTGGATCTGTTTGCTCTTGACAATTC
TGGGGTATATCCCTGGAATTATTTATGCTGTTTATGCCATCACCAAGAAG
TGATCTCTCGTCTTCATCTATTGAGAGATCCCAAGGGCATCATGTGTTAT
GAGATCTTTTATTTACAACCGTTAGATGGGCAGCTCTGATTTGATGTAGC
CAGACGGGTTCAGATTCTTAATCCACTGGGGTGTGCGTGTGTGTGTGGGA
TAGAGCTACTGTTTCCATTAGCGAAGCTAAAGACGTATATTCCGTGCGTT
GTGAGAACAAAAGAAAATAACATCCATACCGCACGTCCCCTGCGCCCCCC
TCCACCACGCCCAGTCACCCGGCAGATCCAGAACGCGGCACGAGGATACT
ACCAGCCCTCAAAACACAAACGATACTGCACCCACACCTCATCACTCATC
TGACTATAGAACTCAATATCAAGACTACAATAACACTCCACCAGGGGCGT
TTGAAGCGGTACTTTTCCATACTACTATAATTACTCATGAGGAGCGCTGG
GCCTATGACAAACCACAGCCCACTGACCCCTTTATCCCTACCTTCTCCCA
GATCCCAACCCTTCCCCTAACTCCCTGAACATTGGAGTACCAAAAAAAAA
CACAACACGAACTAATATCAACACCAAATACAACACCTACTATCAACCCA
AACCCACCCACTCCACCCACAACTACAACCACCACTCACATACCCCTGCA
ACCAGTCCTCTACAACACACCCCAACTCAATCTGTAAGCCTACTCTAATA
ACCAACATTACTGTCATACCTCAACATTTATTCAACCCACTAACTAGAGC
ACGACTACACCACAGTT
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