DY259839

Overview
NameDY259839
Unique NameDY259839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length859
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9376 contig Ccv1_Contig9376:274..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259839 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.376e-59
Identity = 121/220 (55.00%), Postives = 149/220 (67.73%), Query Frame = 1
Query:   88 METERKKQE---LRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPLDDITKAFKQSGTPKKEDAPKK 738
            METE+K  +   L+HL F+RIA I  L  VS+LY+YAK+NSGPL+S V  VE AVT VV PVYQKFK VP              S KFDEHAPP+AK+V +Q H LI  A++KAQ  V EA+TGGP+AA +YAA E K  ++TNSVK W KLN Y   H M D A+P AA +S +YN LV +MT  GY++ GYLPLVP+DDI KA+      +KEDA +K
Sbjct:    1 METEKKNSKEVALKHLAFVRIATIHILASVSNLYEYAKQNSGPLKSAVEKVEGAVTTVVTPVYQKFKDVPDSLLVFLDHKVGEVSYKFDEHAPPMAKKVVNQAHVLIYKATEKAQSFVKEARTGGPKAAFNYAATEYKFFVVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAY------EKEDARRK 214          
BLAST of DY259839 vs. ExPASy Swiss-Prot
Match: SRP_VITRI (Stress-related protein OS=Vitis riparia GN=SRP PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.614e-31
Identity = 79/214 (36.92%), Postives = 112/214 (52.34%), Query Frame = 1
Query:  103 KKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVH------YAAAESKHLLLTN---------SVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPLDDITKAFK 699
            +++ L++L F+++AAI  +VC SSLY+YAK NSGPL+  V TVE  V  V+GPVY+KF  VP             +  + + H P L KR + Q  ++ + A + A  +  E Q  G            Y+  E     L +         +V AW  LN   LF  +A + VPTAA WS+KYN  V    ++GYTV  YLPL+P + I K F+
Sbjct:   16 EEKRLKYLDFVQVAAIYVIVCFSSLYEYAKENSGPLKPGVQTVEGTVKTVIGPVYEKFYDVPFELLMFVDRKVEASIYELERHVPSLVKRASCQAITVAQKAPELALAVASEVQRPGVVDTAKNITKNVYSKCEPTAKELCSKYEPVAEQYAVSAWRSLNRLPLFPQVAQVVVPTAAYWSEKYNQSVSYTAERGYTVALYLPLIPTERIAKVFQ 229          
BLAST of DY259839 vs. ExPASy Swiss-Prot
Match: Y3550_ARATH (REF/SRPP-like protein At3g05500 OS=Arabidopsis thaliana GN=At3g05500 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.319e-29
Identity = 81/220 (36.82%), Postives = 116/220 (52.73%), Query Frame = 1
Query:   94 TERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGG-----------------PRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPLDDITKAFKQ 702
            T+ +K+ L++L F++ AA++AL+  + +Y  AK  SGPL+  V +VE AV  VVGPVY+K+  VP             +  + D   PP+ K+V++Q  S  + A   A+ L  E +  G                 P A   YA  E K      +V AW KLN   LF  +A +AVPTAA  S+KYN  VV+  +KGY V  Y+PLVP + I+K F +
Sbjct:   15 TKEEKERLKYLQFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKYMDQKVDMSVTELDRRVPPVVKQVSAQAISAAQIAPIVARALASEVRRAGVVETASGMAKSVYSKYEPAAKELYANYEPK--AEQCAVSAWKKLNQLPLFPRLAQVAVPTAAFCSEKYNDTVVKAAEKGYRVTSYMPLVPTERISKIFAE 232          
BLAST of DY259839 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSJ (REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 OS=Oryza sativa subsp. japonica GN=Os05g0151300 PE=2 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.783e-25
Identity = 78/240 (32.50%), Postives = 121/240 (50.42%), Query Frame = 1
Query:   76 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPLDDITKAFKQSGTPKKEDAPKKDMQRKRIPAQ 768
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F   G P  + A     + + IP+Q
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF---GYPLADAATSPAPEMQPIPSQ 253          
BLAST of DY259839 vs. ExPASy Swiss-Prot
Match: Y5513_ORYSI (REF/SRPP-like protein OsI_017815 OS=Oryza sativa subsp. indica GN=OsI_017815 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.783e-25
Identity = 78/240 (32.50%), Postives = 121/240 (50.42%), Query Frame = 1
Query:   76 RSEDMETERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPP-------LAKRVASQVH--SLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPLDDITKAFKQSGTPKKEDAPKKDMQRKRIPAQ 768
            ++ +ME   +++ LR+L F++ AA + LV  ++ Y YAK+ +GPLR  V  VE  V AVVGPVY +F GVP             + ++ D   PP       LA+  A++V    L+ TA+  A+  +  A+   PRA   Y   E   +    + +AW  LN   L  ++    +P AA  S +YN  V +  K+G  V  YLPLVP + +++ F   G P  + A     + + IP+Q
Sbjct:   22 KTPEMEAAAEEERLRYLEFVQQAAAQVLVLAAAAYAYAKQGAGPLRPGVDHVEGTVKAVVGPVYDRFHGVPLDLLKFLDRKVGESVQELDRRVPPVVKEAPGLARSAAAEVRQAGLVGTATGLAKSAIARAE---PRARDLYTRYEP--VAERKAAEAWAALNRLPLVPSVTRAVLPAAASLSARYNTAVADGAKRGSAVATYLPLVPTERLSRVF---GYPLADAAASPAPEMQPIPSQ 253          
BLAST of DY259839 vs. ExPASy Swiss-Prot
Match: SRPP_HEVBR (Small rubber particle protein OS=Hevea brasiliensis GN=SRPP PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.722e-22
Identity = 66/203 (32.51%), Postives = 102/203 (50.25%), Query Frame = 1
Query:   88 METERKKQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPLDDITKAF 696
            M  E +++ L++L F+R A + A+   S+LY YAK  SGPL+  V T+E+ V  VV PVY     +P             +    D   PP+ K+V++Q +S+ + A +    +       G +       A  +      +V  W  LN   L   +A++ VPTA  +S+KYN +V   T++GY V  YLPL+P + ITK F
Sbjct:    1 MAEEVEEERLKYLDFVRAAGVYAVDSFSTLYLYAKDISGPLKPGVDTIENVVKTVVTPVYY----IPLEAVKFVDKTVDVSVTSLDGVVPPVIKQVSAQTYSVAQDAPRIVLDVASSVFNTGVQEGAKALYANLEPKAEQYAVITWRALNKLPLVPQVANVVVPTAVYFSEKYNDVVRGTTEQGYRVSSYLPLLPTEKITKVF 199          
BLAST of DY259839 vs. ExPASy Swiss-Prot
Match: SRP_PHAVU (Stress-related protein OS=Phaseolus vulgaris GN=SRP PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.259e-20
Identity = 64/177 (36.16%), Postives = 85/177 (48.02%), Query Frame = 1
Query:  175 LYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRK---FDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPRAAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPLDDITKAF 696
            LY YAK  +GPL+  V TVE AV  VV PVY +F  VP             A RK    D H P   K+V+SQ  S++            E +  G         ++ +      +V AW KLN   LF  +A+  +P AA  ++KYN ++V   +KGY V  YLPLVP + I K F
Sbjct:    6 LYSYAKERAGPLKPGVNTVEDAVKTVVAPVYDRFHLVPVELLKY-------ADRKVGELDRHVPSNVKKVSSQARSVVS-----------EVRRDGVSTFAKTVYSKYEPTAEQCAVSAWRKLNQLPLFPQVANAVLPKAAYCTEKYNEVIVSSAEKGYRVSAYLPLVPTEKIAKVF 164          
BLAST of DY259839 vs. ExPASy Swiss-Prot
Match: Y2778_ARATH (REF/SRPP-like protein At2g47780 OS=Arabidopsis thaliana GN=At2g47780 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.066e-19
Identity = 61/207 (29.47%), Postives = 99/207 (47.83%), Query Frame = 1
Query:  106 KQELRHLGFMRIAAIKALVCVSSLYDYAKRNSGPLRSPVGTVESAVTAVVGPVYQKFKGVPXXXXXXXXXXXXXASRKFDEHAPPLAKRVASQVHSLIETASQKAQKLVIEAQTGGPR--------AAVHYAAAESKHLLLTNSVKAWYKLNHYALFHTMADMAVPTAAQWSKKYNHLVVEMTKKGYTVFGYLPLVPLDDITKAFKQ 702
            + +L+HL F+++AA+    C S+LY+ AK N+GPL+  V  +E  V  V+ P+Y+KF  VP                  + + P L K+ +SQ    +  A++  +  V++      R        AA +YAA              W  LN   LF  +A + +PTA  WS+KYN  V  +  + Y    YLP++P++ I+   +Q
Sbjct:   38 EMKLKHLEFIQVAAVYFAACFSTLYELAKDNAGPLKLGVENIEDCVRTVLAPLYEKFHDVPFKLLLFVDRKVDDVFFDVETYVPSLVKQASSQA---LTVATEVQRTGVVDTTKSIARSVRDKYEPAAEYYAAT------------LWRLLNQLPLFPEVAHLVIPTAFYWSEKYNDAVRYVGDRDYFGAEYLPMIPIEKISDILEQ 229          
The following BLAST results are available for this feature:
BLAST of DY259839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
Y1736_ARATH1.376e-5955.00REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
SRP_VITRI4.614e-3136.92Stress-related protein OS=Vitis riparia GN=SRP PE=... [more]
Y3550_ARATH4.319e-2936.82REF/SRPP-like protein At3g05500 OS=Arabidopsis tha... [more]
Y5513_ORYSJ3.783e-2532.50REF/SRPP-like protein Os05g0151300/LOC_Os05g05940 ... [more]
Y5513_ORYSI3.783e-2532.50REF/SRPP-like protein OsI_017815 OS=Oryza sativa s... [more]
SRPP_HEVBR8.722e-2232.51Small rubber particle protein OS=Hevea brasiliensi... [more]
SRP_PHAVU1.259e-2036.16Stress-related protein OS=Phaseolus vulgaris GN=SR... [more]
Y2778_ARATH1.066e-1929.47REF/SRPP-like protein At2g47780 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YF21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259839 ID=DY259839; Name=DY259839; organism=Citrus clementina; type=EST; length=859bp
TTATTGAACGCTGCTTTCAATAGCAAGCTAATTTCTCGCGAGATCTAAAA
GCAATATCGAATAATTCATCTTTTGCGCAGTGAAGATATGGAGACTGAGA
GGAAGAAACAGGAACTGAGGCATCTTGGATTTATGAGGATAGCCGCGATT
AAGGCTCTGGTGTGCGTGTCGAGTTTGTACGACTACGCAAAACGCAACTC
GGGGCCGCTACGCTCGCCGGTTGGGACTGTCGAAAGCGCCGTGACTGCCG
TCGTGGGACCTGTTTATCAGAAATTCAAGGGCGTGCCTGATGATCTCCTC
GTTTTTCTTGATAAGAAGGTGGATGATGCTTCACGCAAGTTTGACGAGCA
CGCTCCCCCTTTGGCCAAGCGGGTTGCCAGCCAAGTACATAGTCTAATTG
AAACAGCATCACAGAAAGCTCAAAAGCTTGTGATTGAGGCCCAAACCGGG
GGGCCTCGAGCAGCTGTCCATTATGCTGCTGCTGAGTCTAAACACCTTCT
GCTAACAAATTCCGTGAAAGCATGGTATAAACTAAACCACTATGCATTGT
TCCACACAATGGCAGATATGGCTGTTCCCACAGCTGCCCAGTGGTCCAAG
AAGTATAACCATCTTGTCGTGGAGATGACAAAAAAAGGTTACACAGTCTT
TGGCTATCTTCCTTTGGTTCCCCTTGATGACATAACCAAAGCTTTTAAGC
AGAGTGGAACTCCCAAGAAAGAAGATGCCCCAAAAAAAGACATGCAAAGG
AAAAGGATTCCAGCTCAAATTCCGACAAAGAATTTCTTTTTGTCTGAAGA
GTTGGTTCCTCGATGGGTCCGTTTTTAAAATCCAGGGTTAGAAGGTTGGC
CAGGTGAGT
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