DY259843

Overview
NameDY259843
Unique NameDY259843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1030
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259843 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.543e-26
Identity = 73/150 (48.67%), Postives = 95/150 (63.33%), Query Frame = 1
Query:  232 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQVIAFNDFPADKANEILQLASNGSSLS 660
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP  + S  D  V+++      +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVI FNDF A+KA E++ LAS G++ S
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFP-CEASNMDSMVQDV------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTANS 160          
BLAST of DY259843 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.710e-22
Identity = 69/195 (35.38%), Postives = 101/195 (51.79%), Query Frame = 1
Query:  235 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFAPKNDTPNMIDSSLNK-------PAPQTAQMTIFYGGQVIAFNDFPADKANEILQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPV------ESTPPVSPGPPKI 780
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D S        + +   +FP+Q+ F+  + +    D  + K       P  Q+A +TIFYGG+V+ F+DF A+KA E++ LA+ GS+ S       +      Y+    +   +PV       +  P+ P P  +
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFPC-EASGMDSSA----GQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTCFTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEPIQPNPASL 199          
BLAST of DY259843 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.784e-14
Identity = 51/149 (34.23%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  229 PEKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVA--PRNWESMNLFPQQAGFAPKNDTPNMID-SSLNKPAPQT--AQMTIFYGGQVIAFNDFPADKANEILQLASNGSSLS 660
            PEKS+FSQ CSLLS+YLKE GSFG++++G++                 + + L    D  GQ   ++ +     R ++ +  F          D    ID S   K AP++  +Q+TIF+GG+V+ FN+FP DKA EI+++A   + ++
Sbjct:    7 PEKSNFSQRCSLLSRYLKEKGSFGNINMGLARK---------------SDLELAGKFDLKGQQNVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEANHVA 140          
The following BLAST results are available for this feature:
BLAST of DY259843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TI10A_ARATH1.543e-2648.67Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH6.710e-2235.38Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH8.784e-1434.23Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YG02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259843 ID=DY259843; Name=DY259843; organism=Citrus clementina; type=EST; length=1030bp
CTGTAATGAAAGCACCCCAAATATGTTATTATTCCTCGTGTCCAATCAAC
AGATAAGGCTTTTTCTCCTTACAAATACAGATTGATCATCCAACAGAACA
ACTTCACCAATTCAATTCTGCAGCGTCAGTTGCAGCGCACTAGTTTTATT
TTTGCTCGTGGGTTTCCGCTTCTGAGTTGGTTAAACACAACAAGTATGGC
GAGCTCGTCGGAGATGTCGGTTAACTTGCCGGAGAAATCAAGTTTCTCTC
AGACGTGTAGTCTTTTGAGTCAGTACTTGAAAGAGGGAGGTAGCTTTGGA
GATCTTAGCCTCGGGATATCAAGCAACATTGAAGCTAATGGGGTACCCGA
GATCCCGCGGCGGCCAGCAGCTACAACTATGAATTTGTTTCCAGTAAGTG
ACAACTCTGGACAAGATGTTTCAGTTCGAAACATGGTGGCTCCTCGAAAC
TGGGAATCAATGAATTTGTTCCCTCAGCAAGCTGGTTTTGCTCCTAAGAA
TGATACCCCTAACATGATAGATTCAAGTTTAAACAAGCCCGCGCCGCAAA
CTGCTCAAATGACTATATTTTATGGCGGACAAGTGATTGCGTTCAATGAT
TTTCCTGCTGATAAAGCAAATGAAATTCTGCAATTAGCAAGCAACGGGAG
CTCACTGAGCCATGGTACCGCATATCCTCCTATGCAACTGCCGGCCCAGG
GTTACAACTCTTTTGCTGCTAGTTTACCCAAAAGTCCCGTTGAATCCACC
CCCCCCGTTTCCCCTGGCCCCCCCAAAATTCTAACAGACCCCAGTTTGCC
CGGGTCCTCCCCCAACCAATAACCTTTCCAAACTTTGGCAAACATCAAAT
TCCCAAGTTGCCCCCCCCCCCCCCCAAAAACCTGTGAACCACCCATTGCA
AGGAAAAATTTCCCCCCCCCGGTCTTTGGAAAAAAAAAAAAAAAAGGGAT
TGTTTGCCAAAACACCCCCACCCAGTGAAAGGGCCCACCCCGGGGGCCCC
AAAAACACCCCCCCGAAAACCAAGTCCCTG
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