DY259854

Overview
NameDY259854
Unique NameDY259854
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length574
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14842 contig Ccv1_Contig14842:528..1101. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.364e-35
Identity = 75/120 (62.50%), Postives = 81/120 (67.50%), Query Frame = 1
Query:    1 RDFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWD-YSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKAPAT 357
            RDFG              TQFGSGWAWL Y+            P P E D  L+V+K+PNAVNPLVW  Y PLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSW++VS RLE AKA  T
Sbjct:  128 RDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALIT 246          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.217e-31
Identity = 68/116 (58.62%), Postives = 77/116 (66.38%), Query Frame = 1
Query:    1 RDFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 348
            RDFG              TQFGSGWAWL YK                 ++K L +VKTPNA NPLV  Y+PLLTIDVWEHAYYLDFQNRRPDYIS+FM+KLVSWE+VS RL++A A
Sbjct:  103 RDFGSYDAFVKEFKAAAATQFGSGWAWLAYKP----------------EEKKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLKAATA 202          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 122.479 bits (306), Expect = 1.487e-27
Identity = 65/116 (56.03%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 RDFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 348
            RDF               TQFG+GWAWL Y                   ++ L VVKTPNAVNPLV    PLLTIDVWEHAYYLDFQNRRPDYI  FM  LVSWE+VS RLE+AKA
Sbjct:  112 RDFTSYEKFYEEFNAAAATQFGAGWAWLAYS------------------NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.761e-20
Identity = 52/113 (46.02%), Postives = 64/113 (56.64%), Query Frame = 1
Query:    4 DFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESA 342
            DFG              TQFGSGWAWLV                    + +L V KT NA NP+    +PLLT+DVWEHAYYLD+QNRRPDYI+ F+ KLV+W+ V+  L +A
Sbjct:  105 DFGSFDAFVEAFKQAGATQFGSGWAWLVLD------------------NGTLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVAANLAAA 199          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.923e-20
Identity = 49/93 (52.69%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   55 TQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 333
            TQFGSGWAWLV                  +   +L V KTPNA NPLV    PLLT+DVWEHAYYLDFQN RP +I  F+D LV+W+ V++ L
Sbjct:  123 TQFGSGWAWLV------------------DDGGTLKVTKTPNAENPLVHGQKPLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVAQNL 197          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.692e-20
Identity = 51/115 (44.35%), Postives = 62/115 (53.91%), Query Frame = 1
Query:    4 DFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLESAKA 348
            DFG              TQFGSGWAWLV                    + +L + KT NA  P+    +PLLTIDVWEHAYYLD+QNRRPDYIS F++KL +W+  S    +A A
Sbjct:  105 DFGSFENFVTEFKQAAATQFGSGWAWLVLD------------------NGTLKITKTGNADTPIAHGQTPLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANYAAAIA 201          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.663e-19
Identity = 43/92 (46.74%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   58 QFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 333
            QFGSGWAWLV                  + D +L + KT N VNPL +  + LL  DVWEH+YY+DF+N+RP Y++ F+DKLV+WE+V+ R+
Sbjct:  126 QFGSGWAWLV-----------------KDSDGALKITKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWENVASRM 200          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_RICCN (Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii GN=sodB PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.395e-17
Identity = 41/111 (36.94%), Postives = 57/111 (51.35%), Query Frame = 1
Query:    1 RDFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 333
            +DFG               QFGSGWAWL+Y                   D  L ++KT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  115 KDFGSFEEFCEQFKQEAVGQFGSGWAWLIYH------------------DNRLQIIKTANAGTPIAHGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_RICFE (Superoxide dismutase [Mn/Fe] OS=Rickettsia felis GN=sodB PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.822e-17
Identity = 42/111 (37.84%), Postives = 57/111 (51.35%), Query Frame = 1
Query:    1 RDFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 333
            +DFG               QFGSGWAWLVY                   D  L ++KT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++W+ V   L
Sbjct:  115 KDFGSFEGFCEQFKQEAVGQFGSGWAWLVYH------------------DNRLQIIKTANAGTPIANGMKPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWKFVEDNL 207          
BLAST of DY259854 vs. ExPASy Swiss-Prot
Match: SODF_RICBR (Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii (strain RML369-C) GN=sodB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.380e-17
Identity = 43/110 (39.09%), Postives = 56/110 (50.91%), Query Frame = 1
Query:    4 DFGXXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 333
            DFG               QFGSGWAWLVY                   +  L +VKT NA  P+     PLL  DVWEHAYY+D++N+RPDY+ +F+  +++WE V   L
Sbjct:  116 DFGSFEEFCEQFKAEATGQFGSGWAWLVYH------------------NNRLQIVKTANAGTPIANGMQPLLACDVWEHAYYIDYRNKRPDYVDIFIKHMINWEFVENNL 207          
The following BLAST results are available for this feature:
BLAST of DY259854 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
SODF_SOYBN7.364e-3562.50Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL2.217e-3158.62Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH1.487e-2756.03Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_SYNY31.761e-2046.02Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_PLEBO3.923e-2052.69Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNE76.692e-2044.35Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_RHOCA9.663e-1946.74Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_RICCN1.395e-1736.94Superoxide dismutase [Mn/Fe] OS=Rickettsia conorii... [more]
SODF_RICFE1.822e-1737.84Superoxide dismutase [Mn/Fe] OS=Rickettsia felis G... [more]
SODF_RICBR2.380e-1739.09Superoxide dismutase [Mn/Fe] OS=Rickettsia bellii ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YG16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259854 ID=DY259854; Name=DY259854; organism=Citrus clementina; type=EST; length=574bp
AGGGATTTTGGTCTTTTTGAAAAATTTCTTGAGGAATTCAAGGCGGCTGC
AGCCACTCAGTTTGGTTCTGGTTGGGCCTGGCTTGTATACAAAGCCAATA
ATAGAGCTGATGTGGCTAATGCGGTGAATCCTCTTCCATCGGAGAAGGAC
AAGAGCCTTTTAGTGGTGAAGACTCCCAATGCTGTCAATCCTCTTGTCTG
GGATTACTCGCCGCTCCTTACTATTGATGTATGGGAGCATGCTTATTACC
TCGACTTTCAGAATCGACGACCTGATTACATATCAGTTTTCATGGATAAG
CTTGTATCATGGGAATCAGTAAGTAAAAGACTGGAATCAGCCAAAGCTCC
AGCTACCTAGATTGAAATGGAAGAATGATGAAGGAAGATGAAGAGAAAAT
AAATAATAAGCTGCTTGGTAGCAACACTATGTTGTGCTGATGATACTTTG
CTGAACAATAAAAATAGTTAGGTCTTTGGTACACACTACTTTGTGATTAG
TAACCTCTATTGTCAAAGTGTTGGTTTTCTCCTATAACACTCTGGTTATA
ATAAAACCTATCCAAGTATATGTA
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