DY259855

Overview
NameDY259855
Unique NameDY259855
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14949 contig Ccv1_Contig14949:1863..2884. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_PARUW (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Protochlamydia amoebophila (strain UWE25) GN=ispG PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 9.825e-42
Identity = 78/120 (65.00%), Postives = 95/120 (79.17%), Query Frame = 2
Query:  122 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 481
            D  FLR  SF++LQ  R+R +KT+++SCPSCGRTLF+LQ+++  I+ +TSHLPGV IAIMGCIVNGPGEMADADFGYVG  PGKIDLYVGK  V++ I    A D L+ LI+ HGRW EP
Sbjct:  530 DILFLRQLSFSILQAARLRMSKTDFISCPSCGRTLFNLQDVTKRIQSRTSHLPGVKIAIMGCIVNGPGEMADADFGYVGSKPGKIDLYVGKECVEKDIDFADADDRLVNLIRAHGRWIEP 649          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans GN=ispG PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 7.041e-40
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 2
Query:  119 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 481
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLFDLQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L+QLIKD+G W +P
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFDLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVLKNVPSEIADEKLVQLIKDNGLWQDP 660          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_LEPIC (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ispG PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.961e-39
Identity = 74/121 (61.16%), Postives = 93/121 (76.86%), Query Frame = 2
Query:  119 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 481
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLFDLQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L+QLIKD+  W +P
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFDLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVLKNVPSEIADEKLVQLIKDNELWQDP 660          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBL (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=ispG PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.265e-38
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 2
Query:  119 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 478
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLF+LQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L++LIK HG W +
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFNLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVMKNVPSEVADEKLVELIKKHGLWQD 659          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_LEPBJ (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=ispG PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.265e-38
Identity = 72/120 (60.00%), Postives = 92/120 (76.67%), Query Frame = 2
Query:  119 QDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAE 478
            +D + +   S++LLQG R+R TKTEY+SCPSCGRTLF+LQE +A I+ +T HL GV IA+MGCIVNGPGEMADADFGYVG  PGK+ LY GK +V + +  E A + L++LIK HG W +
Sbjct:  540 KDIEEIFQLSYDLLQGTRLRLTKTEYISCPSCGRTLFNLQETTARIKSRTGHLKGVKIAVMGCIVNGPGEMADADFGYVGAGPGKVHLYRGKEIVMKNVPSEVADEKLVELIKKHGLWQD 659          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CHLMU (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia muridarum GN=ispG PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 4.272e-37
Identity = 73/121 (60.33%), Postives = 87/121 (71.90%), Query Frame = 2
Query:  122 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 481
            D    R   F++LQ   +R+T  EY+SCP CGRTLFDL E+S  I+E+T HLPG + IA+MGCIVNGPGEMADADFGYVG  PG IDLYV    VK  + ME A + LIQL+K+HG W EP
Sbjct:  480 DLKLARTLGFSILQSANIRSTTVEYISCPGCGRTLFDLPEVSQRIKERTKHLPGGLKIAVMGCIVNGPGEMADADFGYVGSKPGMIDLYVKHKCVKSYVPMENAEEELIQLLKEHGVWKEP 600          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_AKKM8 (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=ispG PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 7.286e-37
Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 2
Query:  149 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 481
            FN+LQ    R T+ +YVSCPSCGRTL+++QE +A IR+ T HL GV IA+MGCIVNGPGEMADADFGYVGGAP KI+LYV  T VK  I  E+A + L+ LIK++GRW +P
Sbjct:  474 FNILQATGTRLTRADYVSCPSCGRTLYNIQEATARIRKATEHLKGVKIAVMGCIVNGPGEMADADFGYVGGAPNKINLYVKHTPVKFNIPQEEAVERLVDLIKEYGRWVDP 584          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CHLAB (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila abortus GN=ispG PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.168e-36
Identity = 70/125 (56.00%), Postives = 87/125 (69.60%), Query Frame = 2
Query:  107 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 481
            + P      +R+ +F  LQ   +R  KTEY+SCP CGRTLFDL E++  I E+T HL G+ IA+MGCIVNGPGEMADADFG+VG   G +DLYV  T VK  I MEQA D L+ L+K+HG W +P
Sbjct:  481 DLPNIPLSTVREIAFGTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTKRIHERTQHLVGLKIAVMGCIVNGPGEMADADFGFVGSKTGMVDLYVKHTCVKAHIPMEQAEDELVLLLKEHGVWKDP 605          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CHLCV (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydophila caviae GN=ispG PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 8.056e-36
Identity = 69/125 (55.20%), Postives = 89/125 (71.20%), Query Frame = 2
Query:  107 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 481
            + P      +R+ +F+ LQ   +R  KTEY+SCP CGRTLFDL E++  IREKT HL G+ IA+MGCIVNGPGEMAD+DFG+VG   G IDLYV  T VK  I ME A + L++L+++HG W +P
Sbjct:  481 DLPNVSLPTVREIAFSTLQSAGVRLVKTEYISCPGCGRTLFDLPEVTTRIREKTKHLVGLKIAVMGCIVNGPGEMADSDFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELVRLLQEHGVWKDP 605          
BLAST of DY259855 vs. ExPASy Swiss-Prot
Match: ISPG_CHLPN (4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase OS=Chlamydia pneumoniae GN=ispG PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.374e-35
Identity = 69/112 (61.61%), Postives = 85/112 (75.89%), Query Frame = 2
Query:  146 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 481
            +F  LQ   +R  KTEY+SCP CGRTLFDL+E++  IR++T HLPG+ IAIMGCIVNGPGEMADADFG+VG   G IDLYV  T VK  I ME A + LI+L+++HG W +P
Sbjct:  495 AFGTLQNAGVRLVKTEYISCPMCGRTLFDLEEVTTRIRKRTQHLPGLKIAIMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKAHIPMEDAEEELIRLLQEHGVWKDP 606          
The following BLAST results are available for this feature:
BLAST of DY259855 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
ISPG_PARUW9.825e-4265.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIN7.041e-4061.984-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPIC5.961e-3961.164-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBL2.265e-3860.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_LEPBJ2.265e-3860.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLMU4.272e-3760.334-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_AKKM87.286e-3763.964-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLAB6.168e-3656.004-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLCV8.056e-3655.204-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]
ISPG_CHLPN1.374e-3561.614-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YG17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259855 ID=DY259855; Name=DY259855; organism=Citrus clementina; type=EST; length=1022bp
CCATATTCAGCTTTCGAATGGGATTCACAGGGATGACTTGGTCATTGGTG
CCGGTTCCAATGTAGGAGCCCTTTTAGTCGATGGACTTGGAGATGGTTTG
CTGTTAGAAGCCCCAGGACAAGATTTTGATTTTCTGAGGGACACATCTTT
CAACTTACTACAAGGTTGCAGAATGAGGAATACAAAGACGGAGTATGTCT
CATGTCCATCATGTGGTAGAACTTTGTTTGACCTTCAAGAAATAAGTGCA
GAGATACGAGAGAAAACATCGCACTTGCCCGGTGTTTCGATTGCTATCAT
GGGTTGCATTGTCAATGGACCTGGAGAGATGGCTGATGCAGACTTTGGGT
ATGTTGGTGGGGCTCCTGGAAAGATTGACCTGTATGTCGGGAAGACTGTG
GTGAAGCGTGGTATTGCAATGGAGCAGGCAACCGATGCCTTGATCCAACT
AATAAAGGATCACGGGCGCTGGGCGGAGCCTCCCGCAGAAGAGTAGGATA
TGGTAATTTCCATCAACAGATATACAATAAAGACTCAGTTGAAGGGAGAC
CACCATACCCCAGCTGTTGTATATTAAATTCCACATGGCACAAAAGACTA
CACAGTAATAGCAGATCATAATAATTTTTTCCGTCAGATGGAGCATCTAT
AGTTCACCAAGGAAAGCGTTATATGTTTCCTCAAGTGTATGCAGAAAAAG
CTGTAACCCTCCCATTATTAACAAGTCCCAAGTTTCCTACTTTTTGTTTT
CTACACAAACCCAAATAATAATGGTTTTCCCTAAGGGCATAAATAACTTT
CAATGAAACCCTTTGAGTTATGCCTGGGGGTTTCTCTCCTATGAGAAATG
GTTTAAAAAATATCCCTTCCTTTAAAAAAAAAAAAAAACCAACACCCAAC
TTTCTTCGTCAAGGTCTGGATTAATACACCACAAAGTGCTCCCACGTTTT
TTTCCCAAGAAACAGGCCATGATTCGTGTGGAGAAAAAACTACTATATTG
GTCCCCCGAGAGTATATCAACA
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