DY259856

Overview
NameDY259856
Unique NameDY259856
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1065
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1334 contig Ccv1_Contig1334:1..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY259856 vs. ExPASy Swiss-Prot
Match: FB270_ARATH (F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.756e-62
Identity = 113/199 (56.78%), Postives = 139/199 (69.85%), Query Frame = 2 
Query:  146 MADEEVLKAVFPFLDGKDLASCMVVSKQWRDIARDDYLWKCLCARRWPSFCKRPNPPTVTYYKLYQTFNKRQHRRTLLPPRLSFDDLEFFIDIWSEDKLIFSEVVAGPVLQNGMMA-------DLSCDLEVREYKMTIPVEPRFXXXXXXXXXXXXXXXRKDSNRVACIINKSRFEYIDRTARRAHAFEYLDFSPDHPF 721
            M  EEVLK VFP L+G+DLASCM V KQWRDIARDD+ WKC CA++WPS CKR  PPT TYYK+YQTF+KR+  R L PPRLSF++LEFFIDIWSE++L+FS ++ G  L+NG+          L   L   +YKM +P EPRF               R DS++VA IIN+S F+YIDR++ RA AFEYLD SP +PF
Sbjct:    1 MFSEEVLKNVFPLLEGEDLASCMGVCKQWRDIARDDFYWKCQCAKKWPSVCKRHKPPTETYYKMYQTFSKRRLNRALPPPRLSFENLEFFIDIWSEERLVFSGLIPGVALENGIETLPLGISNVLRTHLGRPDYKMVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYRALAFEYLDLSPCYPF 199

HSP 2 Score: 26.9498 bits (58), Expect = 2.756e-62
Identity = 14/34 (41.18%), Postives = 20/34 (58.82%), Query Frame = 1 
Query:  715 PFPLRIRGWISLRSM---ENGNEGVLDFLGMETD 807
            PF   IR WISL  M   +  ++G+LD  G++ D
Sbjct:  198 PFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLD 231

HSP 3 Score: 26.1794 bits (56), Expect = 2.756e-62
Identity = 11/27 (40.74%), Postives = 16/27 (59.26%), Query Frame = 3 
Query:  789 FGNGNGFQEAANSKEKVWWALIWPDWR 869
            FG    F + A++KE+V W L   DW+
Sbjct:  226 FGIQLDFNDVADTKEEVLWLLDMLDWK 252
The following BLAST results are available for this feature:
BLAST of DY259856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB270_ARATH2.756e-6256.78F-box protein At5g39250 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YG18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259856 ID=DY259856; Name=DY259856; organism=Citrus clementina; type=EST; length=1065bp
CTGAAATCTAGGGTTTTTCTAATTCAATCGAACTAATACTTTAGGGAATT
TCTTCTGAATCAGCTGCTTTTGGTGTCTCCAATGCCGTAAGTGGTTGTGG
GAACACACTGTTGTTCTGCTTTTGATTATTATTAACCAGCTAGAAATGGC
AGACGAAGAGGTTTTGAAGGCAGTTTTCCCTTTTCTGGATGGAAAAGATC
TTGCTTCATGTATGGTTGTAAGCAAGCAATGGAGAGACATAGCTCGTGAT
GATTACCTATGGAAGTGCCTTTGTGCAAGGAGATGGCCTTCGTTTTGCAA
GCGACCAAATCCTCCCACGGTAACCTACTACAAGTTATATCAGACCTTTA
ATAAACGGCAGCATCGTCGAACTCTTCTCCCGCCAAGGCTTTCCTTCGAT
GATTTGGAATTTTTCATTGACATTTGGAGTGAAGATAAGTTAATCTTCTC
AGAAGTGGTTGCTGGCCCTGTCCTGCAGAATGGAATGATGGCTGATCTCA
GTTGTGACCTCGAGGTTCGCGAGTACAAGATGACCATACCTGTTGAACCC
AGGTTTACTGTAACTTGGAGCCAGACTGTTAGCGTTTCGGTGCTCGTGGT
ACGCAAGGATTCAAACAGAGTTGCTTGCATAATTAATAAATCTAGGTTTG
AGTATATAGATCGGACAGCCCGTAGGGCCCATGCATTTGAATATCTAGAT
TTCTCTCCTGATCACCCTTTCCCTTAAGAATCCGAGGATGGATTTCTCTG
CGTTCCATGGAAAATGGAAATGAAGGTGTTCTTGATTTTTTGGGAATGGA
AACGGATTCCAGGAAGCTGCTAACTCCAAGGAAAAGGTTTGGTGGGCATT
AATATGGCCTGATTGGAGATAAGAGGCGAAATGCCATTCCAACGCGCCTC
AATAAATTAAGAAGACCTCAAACATAATTATGGCTCAAATGCTAACCCAA
TCTCTTAACAACCCTGTATTGAGCTTGCTCAGGAATCAAAATAATAACTT
CCTTTACCCTCATTGCAATTTGTCTTGTTTCTATACGTGGTATTGTATCC
TTTCCATTCGTGGTG
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