DY259860

Overview
NameDY259860
Unique NameDY259860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1135
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259860 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 2.396e-15
Identity = 41/68 (60.29%), Postives = 49/68 (72.06%), Query Frame = 2
Query:  119 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 322
            H PY+EM++EAIT+LKERTGSS +AIAKF+E+K KA LP NF            A GKL KVKNS+KL
Sbjct:   50 HLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKL 117          
BLAST of DY259860 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.553e-14
Identity = 48/100 (48.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:   23 SAHPAMAPVAAKTPKEGXXXXXXXXXXXXXXXHPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 322
            +A PA AP AAK  K                 HP Y+EM++EAI ALKER+GSS  AI KFIE+K KA LP NF            A GKL KVK S+KL
Sbjct:   27 AAKPAKAPKAAKAKKS----TPGPKKPRVTPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKL 122          
BLAST of DY259860 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.029e-14
Identity = 44/68 (64.71%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  119 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 322
            HPPY EMI +AI  LKERTGSSQ AI KFIEEKQK SLP+NF            A+ KLVKVKNS+KL
Sbjct:   56 HPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122          
BLAST of DY259860 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.717e-13
Identity = 41/68 (60.29%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  119 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 322
            HP Y EMI +AI +LKE+ GSSQ+AIAKFIEEKQK  LP NF            A+GKL+KVK SFKL
Sbjct:   62 HPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKL 128          
BLAST of DY259860 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.929e-13
Identity = 40/68 (58.82%), Postives = 49/68 (72.06%), Query Frame = 2
Query:  119 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 322
            HP + EMI++AI+ LKERTGSSQ+AI KF+E+K K  LP+NF            A+GKLVKVKNSFKL
Sbjct:   51 HPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117          
BLAST of DY259860 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.899e-12
Identity = 41/68 (60.29%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  119 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 322
            HP Y EMI +AI  LKERTGSSQ+AI KFIEEK+K  LP  F            A+GKLVKVK SFKL
Sbjct:   62 HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128          
BLAST of DY259860 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.231e-11
Identity = 40/68 (58.82%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  119 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 322
            HP Y EMI +AI  LKERTGSSQ+AI KFIEEK K SLP  F            A+ KLVKVK SFK+
Sbjct:   62 HPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128          
BLAST of DY259860 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.742e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 2
Query:  119 HPPYSEMINEAITALKERTGSSQFAIAKFIEEKQKASLPNNFXXXXXXXXXXXXANGKLVKVKNSFKL 322
            HPPY +MI EA+ AL E+ GSS +A+AK++E+K K  LP NF            A GKL+K+K S+KL
Sbjct:   49 HPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKL 116          
The following BLAST results are available for this feature:
BLAST of DY259860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
H1_MAIZE2.396e-1560.29Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_WHEAT1.553e-1448.00Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H1_SOLLC2.029e-1464.71Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_PEA1.717e-1360.29Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H1_EUPES2.929e-1358.82Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H11_ARATH1.899e-1260.29Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H12_ARATH1.231e-1158.82Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
H1_SOLPN2.742e-1148.53Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YG22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259860 ID=DY259860; Name=DY259860; organism=Citrus clementina; type=EST; length=1135bp
TTAATAAAAAAATTTTTTGATCTCTGCTCATCCTGCAATGGCTCCCGTGG
CCGCGAAGACTCCTAAGGAAGGAAAATCAAAGAATGCATCCTCAGCGGCA
ACGAAGAAATCGAGGGCCCACCCTCCTTACTCTGAGATGATAAACGAAGC
GATAACTGCGTTGAAGGAGAGGACCGGCTCGAGTCAATTTGCGATCGCGA
AGTTTATCGAGGAGAAACAGAAGGCTAGTCTCCCTAACAATTTCAAGAAA
CTGTTGCTCGTTCAATTGAAGAAGCTTGTTGCCAACGGCAAGCTGGTCAA
AGTCAAGAACTCCTTCAAGCTCCCTCCTAAATCGTCCTCTTCTACCGCCG
CCGCTGCCGCCAAGAAGCCGAAACCTTCCTCTACCGGCGCCACTGCCGCC
AAGAAGCCGAAACCTTCCTCTACCGCTGCCGCCGCCGCGAAGAAGCCTAA
AGCTAGCTCCACTGATGCTGCGGCTAAGCAGACGAAGTCCAAGCCAAAAG
CAAAAGAAGCGGCAGTGAAGTCGATCAAGTCTCCGGCGAAGAAGGCGGTG
GTTGCAGCCAAAGTGAAGAAGCTGAAGAGCATAAAGGTCGCCGGTTAAAA
AGGCTTCCGCCAAGAAGGGAAAGAAATGAATCGAATGCATGGCTCTGTTT
TGATTAGGGTTTAAAATTTGTAAATTTGGGGGAATAATTTTAGGTTTGCC
TTTGATTCGAAATTTGCGACTCCCCTTTCAACCAGCTGGGGACAGAAAAT
TTTTACTTTAACCAAAAAGTAGGAATCCTAACCTCGTTACAACCATATTC
CTTCAATACTTACCCTCTTGCCCCTTACCACATATCAAATATAATACAAC
CCCTCCCTTTCTTTTCCCTACCTTCTCTTCTTAAAACTACACCTTGGCCT
TCAATCTTTTTGTCACCCATCACCTCGTCCTCCGCCCCACTATTCATAAA
ACTCTCTATTCTTTCACCCCCCCGCCATCTCGTCCCCGTCCTAATCTCCT
CACCCTATCCCCTCTCCTCTAGATCCTTCCTCTTAACACCACTCCCCCGA
CTACCTTCCTCCCTGACGCTCTTGTCAACTCTATAGCGATTGTCGTTTCC
ATATACTATATTGCCACCCATTATATTTTGTTTTA
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