DY259866
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 175.637 bits (444), Expect = 3.407e-43 Identity = 92/133 (69.17%), Postives = 99/133 (74.44%), Query Frame = 1 Query: 1 SCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNAGKPDVEVVVNTDDRSS 399 S LRSPQESQSRQIRSCTKVHMQG AVGRA+DLTR +CYEDL KKLEEMFDI+G+L STKKWQVVYT PW+EFC MVRKIFIYT EEVKKLSPK KL N + K D E NT+ RSS Sbjct: 528 SSLRSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNARMQL-KADAEENGNTEGRSS 659
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 2.447e-33 Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 1 Query: 10 RSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLP--GNEELNAGKPDVEVVVNTDDRSSIVGPGC 417 RSP ESQSRQ+RSCTKV MQG+AVGRAVDLT+ + Y DL KLEEMFDI+GDLC + K+WQVVYT PW EFCSMV++I+IY+ EE K L+PK KLP G+ + V+ D+ +S+ C Sbjct: 536 RSPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAKLLAPKSKLPVIGDTIKLSSMNSSHESVDLDNHASVTNRDC 673
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 3.534e-32 Identity = 68/106 (64.15%), Postives = 80/106 (75.47%), Query Frame = 1 Query: 13 SPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLP 330 SP E+QSRQ+RSCTKV MQG+AVGRAVDLTR Y+DL KLEEMFDI+G+L S KKW+VVYT PW EFCSMV++I+IYT EE K+L+PK KLP Sbjct: 538 SPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKSKLP 643
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.101e-25 Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1 Query: 1 SCLRSPQESQSRQ----IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 315 SC + QS+Q RSC KVH QGIA+GR++DLT+F CY++L+ +L++MFD G+L S+K W VVYT PW+EFC+MV KIFIYT EEV+K++P Sbjct: 695 SCPDGTKNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNP 803
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.590e-24 Identity = 50/107 (46.73%), Postives = 73/107 (68.22%), Query Frame = 1 Query: 22 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEE 342 ++Q RSCTKVH QG+A+GR+VDL++F Y++L +L++MF+ +G+L S K WQ+VYT PW EFCS+VRKI+IYT EEV+K++ K P ++ Sbjct: 685 KTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDD 791
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 2.712e-24 Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 22 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNA 351 +SQ RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD G+L G K+W VVYT PW EFC MV KIFIYT EEV++++P +E+ +A Sbjct: 718 KSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.712e-24 Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1 Query: 22 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNA 351 +SQ RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD G+L G K+W VVYT PW EFC MV KIFIYT EEV++++P +E+ +A Sbjct: 718 KSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 3.916e-23 Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 1 Query: 16 PQESQSR--QIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 315 P+++Q++ RSCTKVH QGIA+GR+VDL++F YE+L+ +L+ +F+ G+L K W +VYT PW EFC MVRKIFIYT EEV+K++P Sbjct: 722 PKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNP 823
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 2.149e-21 Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1 Query: 19 QESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEE 342 ++ + + RS TKV MQGIAVGRAVDLT Y++L+ +LEEMF+I+G L + KW VV+T PW+EFC M +KIFIY+++EVKK++ K+K+ + E Sbjct: 481 EQKKQQTSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLL-ARDKWIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLE 587
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 1.066e-20 Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 1 Query: 7 LRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKL 327 LRSP E QS+Q R+CTKV MQG+ +GRAVDL+ + Y+ L+ +LE++FD++G L + +W++ +T PW EFC+MV+KIFIY+ EEVK L + L Sbjct: 495 LRSPTEIQSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQL-QARNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNLKSRKSL 603 The following BLAST results are available for this feature:
BLAST of DY259866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 20
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259866 ID=DY259866; Name=DY259866; organism=Citrus clementina; type=EST; length=912bpback to top |