DY259866

Overview
NameDY259866
Unique NameDY259866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.407e-43
Identity = 92/133 (69.17%), Postives = 99/133 (74.44%), Query Frame = 1
Query:    1 SCLRSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNAGKPDVEVVVNTDDRSS 399
            S LRSPQESQSRQIRSCTKVHMQG AVGRA+DLTR +CYEDL KKLEEMFDI+G+L  STKKWQVVYT            PW+EFC MVRKIFIYT EEVKKLSPK KL  N  +   K D E   NT+ RSS
Sbjct:  528 SSLRSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNARMQL-KADAEENGNTEGRSS 659          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.447e-33
Identity = 74/138 (53.62%), Postives = 92/138 (66.67%), Query Frame = 1
Query:   10 RSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLP--GNEELNAGKPDVEVVVNTDDRSSIVGPGC 417
            RSP ESQSRQ+RSCTKV MQG+AVGRAVDLT+ + Y DL  KLEEMFDI+GDLC + K+WQVVYT            PW EFCSMV++I+IY+ EE K L+PK KLP  G+    +        V+ D+ +S+    C
Sbjct:  536 RSPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAKLLAPKSKLPVIGDTIKLSSMNSSHESVDLDNHASVTNRDC 673          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.534e-32
Identity = 68/106 (64.15%), Postives = 80/106 (75.47%), Query Frame = 1
Query:   13 SPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLP 330
            SP E+QSRQ+RSCTKV MQG+AVGRAVDLTR   Y+DL  KLEEMFDI+G+L  S KKW+VVYT            PW EFCSMV++I+IYT EE K+L+PK KLP
Sbjct:  538 SPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKSKLP 643          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.101e-25
Identity = 55/109 (50.46%), Postives = 74/109 (67.89%), Query Frame = 1
Query:    1 SCLRSPQESQSRQ----IRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 315
            SC    +  QS+Q     RSC KVH QGIA+GR++DLT+F CY++L+ +L++MFD  G+L  S+K W VVYT            PW+EFC+MV KIFIYT EEV+K++P
Sbjct:  695 SCPDGTKNIQSKQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNP 803          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.590e-24
Identity = 50/107 (46.73%), Postives = 73/107 (68.22%), Query Frame = 1
Query:   22 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEE 342
            ++Q    RSCTKVH QG+A+GR+VDL++F  Y++L  +L++MF+ +G+L  S K WQ+VYT            PW EFCS+VRKI+IYT EEV+K++ K   P  ++
Sbjct:  685 KTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDD 791          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.712e-24
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   22 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNA 351
            +SQ    RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD  G+L G  K+W VVYT            PW EFC MV KIFIYT EEV++++P      +E+ +A
Sbjct:  718 KSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.712e-24
Identity = 54/110 (49.09%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   22 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEELNA 351
            +SQ    RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD  G+L G  K+W VVYT            PW EFC MV KIFIYT EEV++++P      +E+ +A
Sbjct:  718 KSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.916e-23
Identity = 50/102 (49.02%), Postives = 70/102 (68.63%), Query Frame = 1
Query:   16 PQESQSR--QIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSP 315
            P+++Q++    RSCTKVH QGIA+GR+VDL++F  YE+L+ +L+ +F+  G+L    K W +VYT            PW EFC MVRKIFIYT EEV+K++P
Sbjct:  722 PKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNP 823          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.149e-21
Identity = 51/108 (47.22%), Postives = 73/108 (67.59%), Query Frame = 1
Query:   19 QESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKLPGNEE 342
            ++ + +  RS TKV MQGIAVGRAVDLT    Y++L+ +LEEMF+I+G L  +  KW VV+T            PW+EFC M +KIFIY+++EVKK++ K+K+  + E
Sbjct:  481 EQKKQQTSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLL-ARDKWIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLE 587          
BLAST of DY259866 vs. ExPASy Swiss-Prot
Match: ARFN_ARATH (Putative auxin response factor 14 OS=Arabidopsis thaliana GN=ARF14 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.066e-20
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 1
Query:    7 LRSPQESQSRQI---RSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYTXXXXXXXXXXXXPWHEFCSMVRKIFIYTAEEVKKLSPKVKL 327
            LRSP E QS+Q    R+CTKV MQG+ +GRAVDL+  + Y+ L+ +LE++FD++G L  +  +W++ +T            PW EFC+MV+KIFIY+ EEVK L  +  L
Sbjct:  495 LRSPTEIQSKQFSSTRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQL-QARNQWEIAFTNNEEDKMLVGEDPWPEFCNMVKKIFIYSKEEVKNLKSRKSL 603          
The following BLAST results are available for this feature:
BLAST of DY259866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ARFA_ARATH3.407e-4369.17Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ2.447e-3353.62Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ3.534e-3264.15Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ1.101e-2550.46Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFD_ORYSJ1.590e-2446.73Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFW_ORYSJ2.712e-2449.09Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI2.712e-2449.09Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFB_ARATH3.916e-2349.02Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFR_ARATH2.149e-2147.22Auxin response factor 18 OS=Arabidopsis thaliana G... [more]
ARFN_ARATH1.066e-2045.45Putative auxin response factor 14 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YH07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259866 ID=DY259866; Name=DY259866; organism=Citrus clementina; type=EST; length=912bp
TCGTGCCTGAGATCTCCTCAGGAGTCTCAAAGCAGGCAGATTCGAAGTTG
CACAAAGGTTCATATGCAAGGAATTGCAGTTGGGAGGGCTGTTGATTTGA
CACGATTTGACTGTTATGAAGACCTTCTCAAGAAACTGGAGGAGATGTTT
GACATTGAGGGAGACCTGTGTGGATCAACCAAGAAGTGGCAAGTGGTCTA
CACTGATGATGAAGATGACATGATGATGGTTGGAGATGATCCATGGCATG
AGTTCTGTAGCATGGTGAGGAAAATTTTCATCTACACAGCAGAAGAAGTA
AAGAAGCTGTCGCCCAAGGTAAAACTTCCAGGTAACGAGGAGCTCAATGC
AGGCAAGCCAGATGTTGAAGTGGTTGTCAACACTGATGATCGGTCATCTA
TTGTTGGACCTGGGTGCTGATATGCCTATGCAGTAAGAAATCAGCAGAGT
ATGGAGGTAATGGTAAGTTGACTGCCTTTAAGATTCGCCCTATAGTAGAA
TCATGAGGTTTAGAGAGAAGCAGCCTTTATAGTCGACATGCCATCCAAAG
AGGGAACTTGCCTTAAAGCATAAGAGTTTGGGTGTTAGAAGTTTCTTATT
TTGCTTTTGCCAAGGGAATCTAAAAGATGCTTGCTTATTCAAAGTCCGGG
TGAACGTGAAGTTTGTTGCGTCATATCTGGCGCCCAACTTAAGAGACAGA
AAACTTGTTCCTTCCCATTTCCTGGTTCCTCTTTTTTTCCTTTTTTCCCA
AAAAAATCTCCAAACACAAAAAAGGGGGAACTTTTCCCCTTTGAAAAAAG
TATAAAAACCCTTGGCCCCCCCCGGTTTGGCCCCCCAGGTATTGACCCCC
CCTCAGACTCCTCCCCGAAAAAAACTTTCTCACCTGAATTGATAAAAATA
TTTTCTTGGGCC
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