DY259867

Overview
NameDY259867
Unique NameDY259867
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1177
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259867_ssr64 microsatellite DY259867_ssr64:64..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP1_CASGL (Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.052e-41
Identity = 98/138 (71.01%), Postives = 105/138 (76.09%), Query Frame = 2
Query:  104 MASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLIETKS 517
            MASVTGTS  M S   S   +  R            GKSF  LRMRSA RF V CAAKPETV+KVC IVKKQLALP D+ VTGESKFA LGADSLDTVEIVMGLEEEFGI+VEE+SAQ+I+TVQDAADLIEKLIE KS
Sbjct:    1 MASVTGTSISMASFKASLAPS--RVSNLRSVSLPIKGKSFAPLRMRSA-RFVVCCAAKPETVEKVCAIVKKQLALPDDSAVTGESKFATLGADSLDTVEIVMGLEEEFGINVEEESAQSIATVQDAADLIEKLIEKKS 135          
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP4_CUPLA (Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata GN=ACL1 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 3.066e-37
Identity = 88/136 (64.71%), Postives = 97/136 (71.32%), Query Frame = 2
Query:  107 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLIETK 514
            ++  G S C+ S SCS     GR             KSFPSLR       RVSC AKPETV KVC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGLEEEFGISVEE+SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKSASCS-PLAPGRISSLRSVSLPVSRKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 137          
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP1_CUPLA (Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata GN=ACL1.1 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 6.394e-35
Identity = 87/137 (63.50%), Postives = 98/137 (71.53%), Query Frame = 2
Query:  107 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRM-RSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLIETK 514
            ++  G S C+ S S S     GR             KSFPSL+  +S+   RVSC AKPETV KVC IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGLEEEFGISVEE+SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAAGASICIKSASFS-PLAPGRISSLRSVSLPVSRKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 138          
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP3_CUPLA (Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata GN=ACL1.3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.860e-34
Identity = 84/139 (60.43%), Postives = 95/139 (68.35%), Query Frame = 2
Query:  107 ASVTGTSACMTSLSCSFKQTQ--GRXXXXXXXXXXXXGKSFPSLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLIETK 514
            A+   +  C+ S SCS  + Q                GK FPSLR    P  FRV C AK ETV +VC+IVKKQLALP D+ V G SKF+ALGADSLDTVEIVMGLEEEFGISVEE+SAQ+I TVQDAADLIEKL+  K
Sbjct:    4 AAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCCQAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLVGNK 142          
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP2_CUPLA (Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata GN=ACL1.2 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.575e-33
Identity = 84/136 (61.76%), Postives = 96/136 (70.59%), Query Frame = 2
Query:  107 ASVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLIETK 514
            ++   +S C+ S SCS     GR             KSF S   R +   RV+C AKPETV KVC IVKKQLALP D+ V+G SKF+ALGADSLDTVEIVMGLEEEFGISVEE+SAQ+I TVQDAADLIEKL+E K
Sbjct:    3 SAAPASSICIKSASCS-ALAPGRISSLRSVSLPVSRKSFFS--RRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADSLDTVEIVMGLEEEFGISVEEESAQSIQTVQDAADLIEKLMEKK 135          
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP1_HORVU (Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.525e-28
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 2
Query:  218 SFPSLRMR-SAPRFRVSCAA------KPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLIETKSA 520
            SF S+  R S+ RF++ CAA      K ETVDKVC IVKKQLA+P  T VT ESKF+ LGADSLDTVEIVMGLEEEF I+V+E SAQ I+TVQDAA+LIEKL+  K+A
Sbjct:   42 SFVSISSRPSSLRFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADSLDTVEIVMGLEEEFNITVDETSAQDIATVQDAANLIEKLVTEKTA 149          
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP3_HORVU (Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare GN=ACL1.3 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 4.438e-28
Identity = 66/98 (67.35%), Postives = 80/98 (81.63%), Query Frame = 2
Query:  230 LRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLIETKSA 520
            LR++  P RF V C+AK +TV+KVC+IVKKQLA+P  T V G +KF+ LGADSLDTVEIVMGLEEEF ISVEE SAQ I+TV+DAA LI+KL+  KS+
Sbjct:   35 LRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGADSLDTVEIVMGLEEEFQISVEETSAQAIATVEDAATLIDKLVSAKSS 132          
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP2_HORVU (Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare GN=ACL1.2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 7.570e-28
Identity = 67/94 (71.28%), Postives = 76/94 (80.85%), Query Frame = 2
Query:  227 SLRMRSAP-RFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLI 505
            S R++  P RF V CAAK ETV+KVC IVK QLAL  DT V+G S FA LGADSLDTVEIVMGLEE FGISVEE SAQTI+TV+DAA+LI+ L+
Sbjct:   34 SFRLQPVPQRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGADSLDTVEIVMGLEEAFGISVEESSAQTIATVEDAANLIDSLV 127          
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP1_SPIOL (Acyl carrier protein 1, chloroplastic OS=Spinacia oleracea GN=ACL1.1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.093e-26
Identity = 71/136 (52.21%), Postives = 87/136 (63.97%), Query Frame = 2
Query:  110 SVTGTSACMTSLSCSFKQTQGRXXXXXXXXXXXXGKSFPSLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLIETKS 517
            S T T     S S   K +QG               SFP+LR  ++ R     AAK ET+DKVC IVK++LAL AD  VT +S+F+ LGADSLDTVEIVM LEEEFGI+V+E  AQ IST+Q AAD+IE L+E K+
Sbjct:    5 SATTTVRVQPSSSSLHKLSQGNGRCSSIVCLDWGKSSFPTLR--TSRRRSFISAAKKETIDKVCDIVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIESLLEKKA 138          
BLAST of DY259867 vs. ExPASy Swiss-Prot
Match: ACP_BRACM (Acyl carrier protein SF2, chloroplastic OS=Brassica campestris GN=Acl1.1 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 9.254e-26
Identity = 61/96 (63.54%), Postives = 76/96 (79.17%), Query Frame = 2
Query:  227 SLRMRSAPRFRVSCAAKPETVDKVCQIVKKQLALPADTTVTGESKFAALGADSLDTVEIVMGLEEEFGISVEEKSAQTISTVQDAADLIEKLIETK 514
            +LR     RF +SCAAKPETV+KV +IVKKQL+L  D  V  E+KFA LGADSLDTVEIVMGLEEEF I + E+ AQ I+TV++AA+LIE+L++ K
Sbjct:   38 NLRRSIPTRFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADSLDTVEIVMGLEEEFDIEMAEEKAQKIATVEEAAELIEELVQLK 133          
The following BLAST results are available for this feature:
BLAST of DY259867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ACP1_CASGL2.052e-4171.01Acyl carrier protein 1, chloroplastic OS=Casuarina... [more]
ACP4_CUPLA3.066e-3764.71Acyl carrier protein 4, chloroplastic OS=Cuphea la... [more]
ACP1_CUPLA6.394e-3563.50Acyl carrier protein 1, chloroplastic OS=Cuphea la... [more]
ACP3_CUPLA1.860e-3460.43Acyl carrier protein 3, chloroplastic OS=Cuphea la... [more]
ACP2_CUPLA1.575e-3361.76Acyl carrier protein 2, chloroplastic OS=Cuphea la... [more]
ACP1_HORVU1.525e-2866.67Acyl carrier protein 1, chloroplastic OS=Hordeum v... [more]
ACP3_HORVU4.438e-2867.35Acyl carrier protein 3, chloroplastic OS=Hordeum v... [more]
ACP2_HORVU7.570e-2871.28Acyl carrier protein 2, chloroplastic OS=Hordeum v... [more]
ACP1_SPIOL1.093e-2652.21Acyl carrier protein 1, chloroplastic OS=Spinacia ... [more]
ACP_BRACM9.254e-2663.54Acyl carrier protein SF2, chloroplastic OS=Brassic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YH08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259867 ID=DY259867; Name=DY259867; organism=Citrus clementina; type=EST; length=1177bp
GACACACATTACATTTCACGCAGTCTTCGTGCTCTTCGTCGTCCTCTCTC
TCGCTCTCTCTCGCTCTCTCTCTTTTGAACTTCAAATCTCAGATCTCTAT
TCAATGGCTTCAGTTACAGGAACTTCAGCCTGCATGACCTCTCTGTCTTG
CTCTTTCAAGCAGACCCAGGGTAGGATCTCTAGTGTGAATTCAGTTTCAC
TTTCCATCAATGGGAAAAGCTTCCCATCCCTTAGAATGCGATCAGCACCC
CGCTTCCGGGTTTCCTGTGCGGCCAAGCCTGAGACTGTGGATAAGGTTTG
TCAAATTGTGAAGAAGCAGTTGGCACTCCCAGCAGATACTACCGTTACCG
GGGAGTCAAAATTCGCTGCCCTTGGAGCTGATTCTCTTGATACGGTTGAG
ATTGTGATGGGACTGGAGGAGGAATTTGGGATCAGCGTTGAAGAAAAAAG
TGCCCAGACCATCTCAACCGTTCAAGATGCTGCAGATCTGATTGAGAAGC
TCATTGAGACCAAGAGTGCTTAACTAAAATGGTCTGGAGAGAGCCGGGCC
TTAGGGACTTAGTTCGTCTAGTTTCGTTTCCGATCTTTTTGTTGGGTTTG
CCCTCAAGGAGTTTCTAGCTTGTATTGTGAACTTGTCAGTGGGTTTTCAT
TCTGTTGGTTCTTTCATTAAAAGAAAACTAAATTAATAATTTGACTGGAA
TTAACCATAAACATTGTTCCATTTTTCGTTTGGGGAACCCGTTTACCGGC
TCCCAATAAACTCCACCTCAGGAAGAACAACATTTTTTAATGATGGAACC
TGAGCTTTTTTATAAAAATAAAAAAATATAATACCCACTTTCCTTGGAGA
AAATTTTGACTTATAAGAAGAACGCTTGTTCTTCTTCTTTTCCTCCAAAC
AGGCTCCTCAACAAAAAAAAAAAAATATTTATATAATCTAGCAAATTTTA
ACCACCCCTGAGTAGGATCCTTTATTAGCGCCATGTGTTGTTTCTCCGAG
AAGATTTTGGGTTATTAGTCAAAATTTCTAGTATACGTATTATTACCACC
AAAAACATACACTCCCTTTTACTGTACATTCAGACGTCCCCACACTACTC
CCCAGCATGCACAACTAGCACACATCTCAAAAGATATCTCGTTTATAATT
CAGTTGCTCTACCTAAAAATCAATTTC
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