DY259875
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY259875 vs. ExPASy Swiss-Prot
Match: PUS3_MOUSE (tRNA pseudouridine synthase 3 OS=Mus musculus GN=Pus3 PE=1 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 2.047e-29 Identity = 78/208 (37.50%), Postives = 107/208 (51.44%), Query Frame = 2 Query: 98 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEE--QIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 ++Q+E L NRVKELE + +L K + N +S + H +R+VALK+ Y G + GFAS N T+E ++F+AL KTR LV ++ S+Y RCGRTDKGVS+ GQVI++ LRS T+ S ++ E + EI Y +LNRVLP DIRV+ W+P FSAR Sbjct: 7 RNQIEKLLNRVKELEQEVERLKKKKE----------------------QANNIKDSSIRENSLGSGKAKRAFDFSAHGRRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR-LVESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFP---TSRDSEDSNLKHEADDLAKEIRYTHILNRVLPADIRVLAWAPVEPSFSAR 188 HSP 2 Score: 29.6462 bits (65), Expect = 2.047e-29 Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1 Query: 718 MESAGKKFVGDHDFQTFCKM 777 M A +K+VG HDF+ CKM Sbjct: 210 MNYAAQKYVGTHDFRNLCKM 229
BLAST of DY259875 vs. ExPASy Swiss-Prot
Match: PUS3_BOVIN (tRNA pseudouridine synthase 3 OS=Bos taurus GN=PUS3 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 2.665e-29 Identity = 65/131 (49.62%), Postives = 91/131 (69.47%), Query Frame = 2 Query: 326 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNI-KECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 H +R+VALK+ Y G + GFAS N T+E ++F+AL KTR LV +++ S+Y RCGRTDKGVS+ GQVI++ LRS+I K ++ + ++ V + + EI Y +LNRVLP DIRV+ W+P T FSAR Sbjct: 60 HGQRHVALKIAYLGWGYQGFASQENTSNTIEEKLFEALTKTR-LVENRQTSNYHRCGRTDKGVSAFGQVISLDLRSHIPKGRDSEHFNLKNEVND--VATEIRYTHILNRVLPPDIRVLAWAPVETSFSAR 187 HSP 2 Score: 29.6462 bits (65), Expect = 2.665e-29 Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1 Query: 718 MESAGKKFVGDHDFQTFCKM 777 M A +K+VG HDF+ CKM Sbjct: 209 MNYAAQKYVGTHDFRNLCKM 228
BLAST of DY259875 vs. ExPASy Swiss-Prot
Match: PUS3_HUMAN (tRNA pseudouridine synthase 3 OS=Homo sapiens GN=PUS3 PE=1 SV=3) HSP 1 Score: 116.316 bits (290), Expect = 3.729e-28 Identity = 70/206 (33.98%), Postives = 109/206 (52.91%), Query Frame = 2 Query: 98 QSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 ++Q E L RV+ELE + +L + E+ ++K + + + + ++ + H +R+VAL++ Y G + GFAS N T+E ++F+AL KTR LV ++ S+Y RCGRTDKGVS+ GQVI++ LRS ++ + +EI Y +LNRVLP DIR++ W+P FSAR Sbjct: 8 RNQTEKLLKRVRELEQEVQRL-------KKEQAKNKEDSNIRENSAGAGKTKRA-----------------FDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTR-LVESRQTSNYHRCGRTDKGVSAFGQVISLDLRSQFPR-GRDSEDFNVKEEANAAAEEIRYTHILNRVLPPDIRILAWAPVEPSFSAR 187 HSP 2 Score: 30.4166 bits (67), Expect = 3.729e-28 Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1 Query: 718 MESAGKKFVGDHDFQTFCKM 777 M+ A +K+VG HDF+ CKM Sbjct: 209 MDYAAQKYVGTHDFRNLCKM 228
BLAST of DY259875 vs. ExPASy Swiss-Prot
Match: TG124_CAEEL (Probable tRNA pseudouridine synthase tag-124 OS=Caenorhabditis elegans GN=tag-124 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.076e-17 Identity = 52/136 (38.24%), Postives = 74/136 (54.41%), Query Frame = 2 Query: 326 HFKRYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED------EIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 H +R +A++ Y G G + + TVE+ I +AL KT L + D + +SRCGRTDKGVS+ Q A+ +RS + ++ QE Q D E+ YV++LN VLPK IRV W+P F+AR Sbjct: 27 HPRRKIAIQFFYLGWEHDGLVQQPHTQNTVENHIMQALIKTHL-IEDWTKCDFSRCGRTDKGVSAFKQTAAMVVRSLCP--GDSGVFWSDSTQEHQKVDYKASGEELPYVKMLNGVLPKTIRVFAWAPVAQTFNAR 159 HSP 2 Score: 25.0238 bits (53), Expect = 2.076e-17 Identity = 8/20 (40.00%), Postives = 12/20 (60.00%), Query Frame = 1 Query: 718 MESAGKKFVGDHDFQTFCKM 777 M + VG+HDF FC++ Sbjct: 181 MRQGAELLVGEHDFSNFCQI 200
BLAST of DY259875 vs. ExPASy Swiss-Prot
Match: PUS3_YEAST (tRNA pseudouridine synthase 3 OS=Saccharomyces cerevisiae GN=PUS3 PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.853e-16 Identity = 51/136 (37.50%), Postives = 75/136 (55.15%), Query Frame = 2 Query: 326 HFKRYVALKVMYFGQRFYGFASDGNMEP--TVESEIFKALEKTRLLVADKKESH-YSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIED--EIDYVRVLNRVLPKDIRVMG-WSPAPTDFSAR 715 H R++AL+ Y G + G A P TVE I +A+ K +L+ + + + +SRCGRTDKGVS++ QVI++ +RSN+ + Q + D EI YV VLN++LP DIR+ P +F AR Sbjct: 89 HNTRFIALRFAYLGWNYNGLAVQKEYTPLPTVEGTILEAMNKCKLVPSMVLQDYKFSRCGRTDKGVSAMNQVISLEVRSNLT----------DEEQRDPTNDSREIPYVHVLNQLLPDDIRISAVCLRPPPNFDAR 214 HSP 2 Score: 29.6462 bits (65), Expect = 2.853e-16 Identity = 11/24 (45.83%), Postives = 15/24 (62.50%), Query Frame = 1 Query: 718 MESAGKKFVGDHDFQTFCKMGSTK 789 M A FVG+ DF+ FCK+ +K Sbjct: 236 MSKAASYFVGERDFRNFCKLDGSK 259
BLAST of DY259875 vs. ExPASy Swiss-Prot
Match: YL85_SCHPO (Putative tRNA pseudouridine synthase C25B8.05 OS=Schizosaccharomyces pombe GN=SPAC25B8.05 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.707e-16 Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 2 Query: 80 ELISSLQSQLEALQNRVKELEADNAKLLSKLSLCRCEKIEDKVHDGVEDGTTLVEENRKTESXXXXXXXXXXXXXXXXTLNHHFKRYVALKVMYFGQRFYGFAS--DGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 EL LQ +L N KE+E N + +K L +IE + H E LV ++ ++ T+ +VA K Y G + G A + PTVE ++F+AL + L + D +SRCGRTDKGVS++GQVI++ +R + + I Y VLNR+LP DIR+ G++ P F AR Sbjct: 20 ELDGKLQKNTNSLPN--KEIEGKNEVIKNKNKLDNGNEIEPQ-HLSQE----LVLQHALQDASSLPKLKPVRPFQLEKTV------FVAFKFAYCGWNYNGLAYQLEPTPLPTVEGKVFEALLRAHL-ITDPSSCSFSRCGRTDKGVSAMGQVISLNVRHSERR-------------------PIIYCDVLNRLLPADIRITGYAFPPEGFDAR 200 HSP 2 Score: 30.0314 bits (66), Expect = 3.707e-16 Identity = 10/24 (41.67%), Postives = 17/24 (70.83%), Query Frame = 1 Query: 718 MESAGKKFVGDHDFQTFCKMGSTK 789 M A ++G+HDF+ FCK+ ++K Sbjct: 226 MNEAAALYLGEHDFRNFCKIDASK 249
BLAST of DY259875 vs. ExPASy Swiss-Prot
Match: TRUA_METST (tRNA pseudouridine synthase A OS=Methanosphaera stadtmanae (strain DSM 3091) GN=truA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 2.892e-11 Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 2 Query: 335 RYVALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSAR 715 R VALK+ Y G F+G+ N TVE E+ + ++T + + D +HYS GRTDKGV S G VI+ I DE ++ LN +LP DI+++G + P F R Sbjct: 2 RRVALKIAYIGSNFHGYQRQPNYR-TVEGELLRVFKETNI-IEDTWTAHYSVAGRTDKGVHSTGNVISF------------------------ITDEDIHINQLNGLLPDDIKIIGEARVPYGFKVR 102 HSP 2 Score: 21.9422 bits (45), Expect = 2.892e-11 Identity = 8/19 (42.11%), Postives = 12/19 (63.16%), Query Frame = 1 Query: 718 MESAGKKFVGDHDFQTFCK 774 M A + F+G H+F+ F K Sbjct: 128 MHVAMESFIGKHNFRNFSK 146
BLAST of DY259875 vs. ExPASy Swiss-Prot
Match: TRUA_THESM (tRNA pseudouridine synthase A OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=truA PE=3 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 4.881e-11 Identity = 44/127 (34.65%), Postives = 65/127 (51.18%), Query Frame = 2 Query: 341 VALKVMYFGQRFYGFASDGNMEPTVESEIFKALEKTRLLVADKKESHYSRCGRTDKGVSSVGQVIAIYLRSNIKECNTNNASMGETVQEEQIEDEIDYVRVLNRVLPKDIRVMGWSPAPTDFSARLW 721 +ALK+ Y G +FYGF ++ TVE E+ K L+K + + D KE+++ RTD+GVS++G VIA NT + E R+LN L +DI ++G + P DF R W Sbjct: 3 IALKIAYDGTKFYGFQRQPDLR-TVEGELIKVLKKLGI-IEDVKEANFKGASRTDRGVSALGNVIAF---------NTAKPELAE-------------ARILNHHL-RDIWILGKAEVPEDFHPRFW 104 HSP 2 Score: 21.9422 bits (45), Expect = 4.881e-11 Identity = 6/20 (30.00%), Postives = 13/20 (65.00%), Query Frame = 1 Query: 718 MESAGKKFVGDHDFQTFCKM 777 +++ + F+G HDF F ++ Sbjct: 124 LKACAEAFLGRHDFSNFARL 143 The following BLAST results are available for this feature:
BLAST of DY259875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY259875 ID=DY259875; Name=DY259875; organism=Citrus clementina; type=EST; length=945bpback to top |