DY259885

Overview
NameDY259885
Unique NameDY259885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length994
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig503 contig Ccv1_Contig503:47..1040. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNS2_ARATH (Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.550e-84
Identity = 135/189 (71.43%), Postives = 156/189 (82.54%), Query Frame = 2
Query:  173 QREFDYFNFALQWPGTQCQHTRHCCPSNGCCRGSNAPTEFTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVFRDEYSYFLTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHATPKLDCSKDAGNELPPCLYRDFSPR 739
            QREFDYF  +LQWPGT C+ TRHCC  N CCRGS+APT+FTIHGLWPDYNDG+WPSCC +S F EKEISTL+D LEKYWPS  CGS S+C  G+G FW HEWEKHGTCS PVF DEY+YFLTTLNLY K+NVT VL +AGY+ SN+EKYPLGGIV+AI NAFH TP++ C +DA +E+  C Y+DF PR
Sbjct:   29 QREFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYNDGSWPSCCYRSDFKEKEISTLMDGLEKYWPSLSCGSPSSCNGGKGSFWGHEWEKHGTCSSPVFHDEYNYFLTTLNLYLKHNVTDVLYQAGYVASNSEKYPLGGIVTAIQNAFHITPEVVCKRDAIDEIRICFYKDFKPR 217          
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNS1_ARATH (Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.623e-35
Identity = 84/199 (42.21%), Postives = 109/199 (54.77%), Query Frame = 2
Query:  110 ASFCQLKAIGIREVVDDAVGEQREFDYFNFALQWPGTQCQHTRHCCPSNGCCRGSNAPTEFTIHGLWPDYNDGTWPSCCKKSK-FDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVFRDEYSYFLTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHATPKLDCSKD-AGN 700
            AS C +  + I   V  A     +FD+F F  QWPG+ C   + CC  N          +F IHGLWP+Y DGT+PS C  SK FD   IS LL +++K WP+  C S     SGE  FW HEWEKHGTCS  V  D++ YF T LNL  K N+   L +AG  P   + Y L  I  +I  +   TP ++C++D +GN
Sbjct:    6 ASLCLISLLVILPSVFSASSSSEDFDFFYFVQQWPGSYCDTQKKCCYPN----SGKPAADFGIHGLWPNYKDGTYPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSG----SGEA-FWEHEWEKHGTCSESVI-DQHEYFQTALNLKQKTNLLGALTKAGINPDG-KSYSLESIRDSIKESIGFTPWVECNRDGSGN 193          
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNLX_SOLLC (Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.054e-32
Identity = 73/176 (41.48%), Postives = 102/176 (57.95%), Query Frame = 2
Query:  176 REFDYFNFALQWPGTQCQHTRHCC-PSNGCCRGSNAPTEFTIHGLWPDYNDGTWP-SCCKKSKFDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEGL-FWAHEWEKHGTCSFPVFRDEYSYFLTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHATPKLDCSKDA 694
            ++FD+F F  QWP + C   R CC P+ G         +F+IHGLWP+Y DG WP +C ++S  DE E S L+ T+EK WPS  C S+      +GL FW+HEW KHGTCS     ++++YF T L+   K N+ + LN AG  P N + Y +  I  AI      TP ++C+ D+
Sbjct:   26 QDFDFFYFVQQWPASYCDTRRSCCYPTTG-----KPDEDFSIHGLWPNYKDGKWPQNCDRESSLDESEFSDLISTMEKNWPSLACPSS------DGLKFWSHEWLKHGTCS---ALNQHAYFQTALDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIEKGVGHTPFIECNVDS 187          
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNLE_SOLLC (Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.896e-30
Identity = 71/179 (39.66%), Postives = 104/179 (58.10%), Query Frame = 2
Query:  176 REFDYFNFALQWPGTQCQHTRHCC-PSNGCCRGSNAPTEFTIHGLWPDYNDGTWPSCCK-KSKFDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEG-LFWAHEWEKHGTCSFPVFRDEYSYFLTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHATPKLDCSKD-AGN 700
            ++FD+F F  QWPG+ C   + CC P+ G         +F IHGLWP+ NDGT+PS C   S +D+ +IS L+ ++++ WP      T  C SG G  FW+HEWEKHGTC+  V  ++++YF   L+L  + ++  +L  A   P   E Y L  I +AI +A   TP + C+ D +GN
Sbjct:   27 KDFDFFYFVQQWPGSYCDTKQSCCYPTTG-----KPAADFGIHGLWPNNNDGTYPSNCDPNSPYDQSQISDLISSMQQNWP------TLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKNQIDLLSILQGADIHPDG-ESYDLVNIRNAIKSAIGYTPWIQCNVDQSGN 193          
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNS3_ARATH (Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.575e-28
Identity = 67/178 (37.64%), Postives = 95/178 (53.37%), Query Frame = 2
Query:  176 REFDYFNFALQWPGTQCQHTRHCC-PSNGCCRGSNAPTEFTIHGLWPDYNDGTWP-SCCKKSKFDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEGL-FWAHEWEKHGTCSFPVFRDEYSYFLTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHATPKLDCSKDAGN 700
            ++FD+F F LQWPG  C     CC P  G         +F IHGLWP+Y  G WP +C   S+FD+  +S L+  L++ WP      T +C S +G+ FW HEWEKHGTC+     D++ YF   L L  K N+   L  AG  P + + Y +  I + I       P ++C+KD+ +
Sbjct:   20 QDFDFFYFVLQWPGAYCDSRHSCCYPQTG-----KPAADFGIHGLWPNYKTGGWPQNCNPDSRFDDLRVSDLMSDLQREWP------TLSCPSNDGMKFWTHEWEKHGTCAESEL-DQHDYFEAGLKLKQKANLLHALTNAGIKPDD-KFYEMKDIENTIKQVVGFAPGIECNKDSSH 184          
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNDI_DICDI (Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 4.908e-22
Identity = 59/181 (32.60%), Postives = 84/181 (46.41%), Query Frame = 2
Query:  179 EFDYFNFALQWPGTQCQHTRHCCPSNGCCRGSNAPTEFTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFP-VFRDEYSYFLTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHATPKLDCSKDAGNELPPCL 718
            +FD++ F  QW  + C         +  C  +     FTIHGLWP+ +DG++PS C    F+   I  L D L   WPS    +T         FW HE+ KHGTCS      D + YF T + LY ++N+T  L      PS++  Y    I +AI   F   P + CS    + +  C+
Sbjct:   31 DFDFYLFVQQWIYSYCD--------SQTCIQNKEREAFTIHGLWPENSDGSYPSFCSGPSFNVNAIQDLEDQLNFDWPSLTGPNTD--------FWTHEFSKHGTCSITGPITDIHDYFATGIKLYTEFNITAALESENIYPSDSNTYKPVDITNAITTHFGGKPGIQCSSGQLSTVAVCI 195          
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNOY_CRAGI (Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.428e-21
Identity = 68/220 (30.91%), Postives = 100/220 (45.45%), Query Frame = 2
Query:  176 REFDYFNFALQWPGTQCQHTRHCCPSNGCCRGSNAPTEFTIHGLWPDYN-DGTWPSCCKKS-KFDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTC--SFPVFRDEYSYFLTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHATPKLDCSKDAGN-------ELPPCLYRDF-----SPRIVSWTTPPKSQFFLRP 787
            ++++YF FA QWP   C   + C   +           + IHGLWP  + +   P  C  S  FD   +  L+  L+KYWP+    + +        FW HEW KHGTC  S P   +E  YF   L L+ KYN++R+L   G LPS T  Y +    +A+         ++C  D          E+  CL ++F     + + VS TT P+ + F  P
Sbjct:    1 KDWNYFTFAQQWPIAVCAEHKSCFIPDSV-------VGWGIHGLWPSSDTESKGPENCNGSWPFDINNVMPLVPELKKYWPNLYPDTKANS------FWEHEWSKHGTCATSLPATSNELKYFGMGLKLHAKYNISRILVNQGILPSKTAGYMINETEAAVKRELGVDAVIECVYDKEKTKKQLLYEISICLTKEFELISCNKKEVSETTCPRKEPFFYP 207          
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNS1_PYRPY (Ribonuclease S-1 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.086e-21
Identity = 69/217 (31.80%), Postives = 96/217 (44.24%), Query Frame = 2
Query:  182 FDYFNFALQWPGTQCQHTRHCCPSNGCCRGSNAPTE--FTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVFRDEYSYFLTTLNLYF--KYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHAT-PKLDCSKDAGN-----ELPPCLYRDFSPRIVSWTTPPKSQFFLRPFSSTY 802
            +DYF F  Q+    C      C         N PT+  FT+HGLWP   +G  P  CK +  + ++I  +   LE  WP+    S          FW  EW KHGTC +P  +D+  Y  T + +Y   K NV+ +L++A   P+ T + PL  I +AI    + T PK  C K+        E+  C  RD    I     PP+   F  P S  Y
Sbjct:   28 YDYFQFTQQYQPAVCNSNPTPC---------NDPTDKLFTVHGLWPSNRNGPDPEKCKTTALNSQKIGNMTAQLEIIWPNVLNRSDHVG------FWEKEWIKHGTCGYPTIKDDMHYLQTVIRMYITQKQNVSAILSKAAIQPNGTNR-PLVDIENAIRRGTNNTKPKFKCQKNTRTTTELVEVTLCSDRDLKKFINCPHGPPQGSRFSCPSSVQY 228          
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNPB_PHYPO (Ribonuclease Phyb OS=Physarum polycephalum PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.086e-21
Identity = 59/186 (31.72%), Postives = 88/186 (47.31%), Query Frame = 2
Query:  182 FDYFNFALQWPGTQCQHTRHCCPSNGCCRGSNAPTEFTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVFRDEYSYFLTTLNLYFKYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHATPKLDCSKDAGNELPPCLYRDFSPR 739
            FD+F F  +W                    S +   FTIHGLWP+ +DG++PS C   KF    IS L+DT++  WPS+   + S        FW+HEW KHGTCS      E+ +F T L+LY +Y+V   L+  G  P ++       ++S I +     P L+C       +  C+ ++   R
Sbjct:    5 FDFFIFVTEW------------------NASISTEYFTIHGLWPENSDGSYPSGCSSGKFSTSTISDLIDTMQ-VWPSFTGDNAS--------FWSHEWSKHGTCSGYA---EHDFFATVLSLYDQYDVKSALDNGGIEPGSS-SVSSDSLISVITDNIGGVPVLNCEGSTFASVGLCITKNLELR 159          
BLAST of DY259885 vs. ExPASy Swiss-Prot
Match: RNS4_PYRPY (Ribonuclease S-4 OS=Pyrus pyrifolia PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.835e-20
Identity = 67/217 (30.88%), Postives = 96/217 (44.24%), Query Frame = 2
Query:  182 FDYFNFALQWPGTQCQHTRHCCPSNGCCRGSNAPTE--FTIHGLWPDYNDGTWPSCCKKSKFDEKEISTLLDTLEKYWPSYRCGSTSTCYSGEGLFWAHEWEKHGTCSFPVFRDEYSYFLTTLNLYF--KYNVTRVLNEAGYLPSNTEKYPLGGIVSAIPNAFHAT-PKLDCSKDAGN-----ELPPCLYRDFSPRIVSWTTPPKSQFFLRPFSSTY 802
            FDYF F  Q+    C      C         N PT+  FT+HGLWP   +G  P  CK +  + ++I  +   LE  WP+    S          FW  EW KHGTC +P  +D+  Y  T + +Y   K NV+ +L++A   P+   +  L  I +AI +  + T PK  C K+        E+  C  RD +  I     PPK   +  P +  Y
Sbjct:   28 FDYFQFTQQYQPAVCNSNPTPC---------NDPTDKLFTVHGLWPSNRNGPDPEKCKTTTMNSQKIGNMTAQLEIIWPNVLNRSDHVG------FWEREWLKHGTCGYPTIKDDMHYLKTVIKMYITQKQNVSAILSKATIQPNGNNR-SLVDIENAIRSGNNNTKPKFKCQKNTRTTTELVEVTLCSNRDLTKFINCPHGPPKGSRYFCPANVKY 228          
The following BLAST results are available for this feature:
BLAST of DY259885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RNS2_ARATH1.550e-8471.43Ribonuclease 2 OS=Arabidopsis thaliana GN=RNS2 PE=... [more]
RNS1_ARATH8.623e-3542.21Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=... [more]
RNLX_SOLLC1.054e-3241.48Intracellular ribonuclease LX OS=Solanum lycopersi... [more]
RNLE_SOLLC4.896e-3039.66Extracellular ribonuclease LE OS=Solanum lycopersi... [more]
RNS3_ARATH1.575e-2837.64Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=... [more]
RNDI_DICDI4.908e-2232.60Ribonuclease DdI OS=Dictyostelium discoideum GN=dd... [more]
RNOY_CRAGI1.428e-2130.91Ribonuclease Oy OS=Crassostrea gigas PE=1 SV=1[more]
RNS1_PYRPY7.086e-2131.80Ribonuclease S-1 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNPB_PHYPO7.086e-2131.72Ribonuclease Phyb OS=Physarum polycephalum PE=1 SV... [more]
RNS4_PYRPY7.835e-2030.88Ribonuclease S-4 OS=Pyrus pyrifolia PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259885 ID=DY259885; Name=DY259885; organism=Citrus clementina; type=EST; length=994bp
GTAGCAACAGGTGGTAGCAAGGTATCGTAACGTAAAGTTAACAGCGATGG
CATCTTTCTCTCTGATTCTGATTCTGATTCGACTATCGCTCGTCGCGGCG
CTACTTACGGCGTCGTTTTGCCAGCTCAAAGCGATCGGAATCAGAGAGGT
AGTAGACGATGCCGTAGGTGAGCAGAGGGAGTTCGATTACTTCAACTTTG
CTCTCCAGTGGCCTGGCACTCAATGTCAACACACTCGCCATTGCTGTCCC
TCCAACGGTTGTTGCCGAGGGTCGAATGCTCCAACTGAATTTACAATCCA
TGGACTGTGGCCTGACTATAATGATGGAACCTGGCCTTCTTGCTGCAAGA
AATCTAAGTTTGATGAGAAGGAGATCTCAACATTGCTTGATACTCTGGAG
AAGTACTGGCCATCATACAGATGTGGTTCAACATCAACTTGCTATAGTGG
AGAAGGGCTATTTTGGGCTCATGAGTGGGAGAAGCATGGAACTTGTTCTT
TTCCAGTATTTAGAGATGAATACAGTTACTTTTTAACTACCCTCAACTTG
TACTTTAAATATAATGTCACGAGAGTACTGAATGAAGCTGGATATCTTCC
TTCCAATACTGAAAAGTATCCTTTAGGAGGCATTGTCTCTGCCATTCCGA
ATGCTTTCCATGCAACTCCAAAACTGGATTGCTCGAAAGATGCTGGGAAT
GAACTTCCACCATGCCTTTACAGGGATTTCAGCCCCCGGATTGTATCCTG
GACAACCCCCCCGAAATCCCAATTTTTTCTCCGCCCTTTCAGTTCCACAT
ACCTTTCCTTGCCGGGATTATTCTTTCTCCGGCTTCGATCCTCCCCGGCC
GCCTTCTCCCGGGCCCCTCAATCTTCACCCCTTTTTTTTTCCCCTCTCGG
CCAGGGTTCACGCTCACTGCACCCCCTCCCTCCTTCCTCCCGCACATTTT
CATCCCCCCCCCATACAAACCCTGCCCCCTACTCTTCTTCCCTT
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