DY259893

Overview
NameDY259893
Unique NameDY259893
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length794
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:631..1424. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 384.8 bits (987), Expect = 2.943e-106
Identity = 181/200 (90.50%), Postives = 192/200 (96.00%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 601
            TIA+KVDY Y FFEK+IPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKVYK+GK GQESH   TEFDRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK+KFIDTSSKFGHGRFQTT EKQ+++G++KA
Sbjct:  190 TIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 368.237 bits (944), Expect = 2.850e-101
Identity = 171/198 (86.36%), Postives = 189/198 (95.45%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRM 595
            TIA+KVD+AY FFEKQIP++AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKK+Y+LGK G E+HT +TE+DRTEKD+TPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIK+KFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  190 TIAQKVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 364.385 bits (934), Expect = 4.116e-100
Identity = 170/196 (86.73%), Postives = 187/196 (95.41%), Query Frame = 2
Query:    5 IAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGR 592
            IA+KVDYA   FEKQ+PVDA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKVY++GK GQE+H+ +TE+DRTEKDITPMGGFPHYGIVK+DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIK+KFID +S  GHGRFQT+QEK K+YGR
Sbjct:  191 IAKKVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 1.425e-76
Identity = 132/202 (65.35%), Postives = 164/202 (81.19%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG---GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            T+AEKVD+A    EKQ+PVD+VF +DEMID IGVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y+LGK     +    G T++D TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+ QT R A E+I +K+IDTSSKFGHGRFQT  EK+ + G++K
Sbjct:  189 TVAEKVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 275.789 bits (704), Expect = 1.925e-73
Identity = 130/205 (63.41%), Postives = 165/205 (80.49%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            T+AEK+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+FTVARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  189 TVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 274.248 bits (700), Expect = 5.602e-73
Identity = 129/205 (62.93%), Postives = 165/205 (80.49%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            T+AEK+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  189 TVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 7.316e-73
Identity = 129/205 (62.93%), Postives = 165/205 (80.49%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            T+AEK+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  189 TVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 273.863 bits (699), Expect = 7.316e-73
Identity = 129/205 (62.93%), Postives = 164/205 (80.00%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            T+AEK+D+A    E+Q+PV  VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  189 TVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 7.316e-73
Identity = 129/199 (64.82%), Postives = 159/199 (79.90%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 598
            +++EKVD+A   FEK + VD+VF+++EMID+I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY++GKGG E +   TEFDRT+K ITPMGGF HYG V +D++M+KG   G +KRVVTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  188 SVSEKVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of DY259893 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.631e-72
Identity = 127/204 (62.25%), Postives = 160/204 (78.43%), Query Frame = 2
Query:    2 TIAEKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG----GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 601
            +I EKV++A   FEK + V  VF ++E+ID+IGVTKGKG+ GV+ RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y++G+     G++  TG TEFD TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+  QT R ALE+I +KFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  190 SIVEKVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
The following BLAST results are available for this feature:
BLAST of DY259893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_ORYSJ2.943e-10690.5060S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH2.850e-10186.3660S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL32_ARATH4.116e-10086.7360S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_TOXCA1.425e-7665.3560S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_MOUSE1.925e-7363.4160S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_RAT5.602e-7362.9360S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_HUMAN7.316e-7362.9360S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_BOVIN7.316e-7362.9360S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_ASHGO7.316e-7364.8260S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_DICDI3.631e-7262.2560S ribosomal protein L3 OS=Dictyostelium discoide... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YI18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259893 ID=DY259893; Name=DY259893; organism=Citrus clementina; type=EST; length=794bp
CACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAAGCAAA
TTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACATCATCGGT
GTCACGAAAGGTAAAGGTTATGAAGGTGTTGTCACCCGTTGGGGTGTTAC
CCGCCTTCCTCGCAAGACTCACAGAGGTCTGCGTAAGGTGGCTTGTATTG
GTGCCTGGCATCCTGCTAGGGTTTCCTTCACAGTTGCCAGAGCTGGTCAG
AATGGATACCATCATCGTACTGAAATGAACAAGAAGGTTTACAAGCTTGG
CAAGGGTGGACAGGAGTCTCACACTGGCATAACTGAATTTGACAGGACTG
AGAAGGACATTACCCCAATGGGTGGCTTTCCTCACTATGGTATTGTGAAA
GATGATTATTTGATGATCAAGGGATGCTGTGTTGGACCTAAGAAGAGGGT
GGTCACGCTTCGTCAGTCGCTTCTCAAACAGACATCTCGTTTAGCTCTTG
AGGAAATCAAAATCAAGTTCATTGATACCTCTTCCAAGTTTGGGCATGGC
CGCTTCCAGACTACACAGGAGAAACAGAAGTACTATGGACGCATGAAAGC
ATAATTATGCTAAAAAGACAAGAGTTTTGCACCGTTATAGTTAATTCAGG
CAGTCTAAATTTTATCCAGTTTGACTATCTTGGAACAGTTTTTGAGCCTG
GCATCAGCTGTGTTTCTTTTTCTTTTTTAATTTATTTTTTAAGAGATGGT
CCTGCTTTATTCTATTGAAAATTTTTAAATTAAAAAAATTTCCT
back to top