DY259895

Overview
NameDY259895
Unique NameDY259895
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1009
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL9_ARATH (4-coumarate--CoA ligase-like 9 OS=Arabidopsis thaliana GN=4CLL9 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.250e-50
Identity = 95/183 (51.91%), Postives = 129/183 (70.49%), Query Frame = 3
Query:  144 TNSNGLIDPNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAA-------PFLMNAATGRRLTYPEFLRQTNSLTLSLQKHY-SLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPPN---FRTVLVDSPEFLSLLS 659
            TN + LID +SGF  +T  +HS+RP + LPP  QPLS  +F LS+L KS+    A        +L+N+++G  LTY E LR+  SL +SL++ + SL+  +VAFILSPSS +IPVLY +L+S+GVVVSPANP+GS SE+SHQ+ +S+P IAFATS+T  KL  +     TVL+DS EFLS L+
Sbjct:    5 TNDSRLIDRSSGFDQRTGIYHSLRPSLSLPPIDQPLSAAEFALSLLLKSSPPATAGKNIEALTYLVNSSSGDNLTYGELLRRVRSLAVSLRERFPSLASRNVAFILSPSSLDIPVLYLALMSIGVVVSPANPIGSESEVSHQVEVSEPVIAFATSQTVKKLQSSSLPLGTVLMDSTEFLSWLN 187          

HSP 2 Score: 50.8322 bits (120), Expect = 2.250e-50
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1
Query:  661 LNTKNDVVISPPAV-VNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVA 804
            LN  +   ++P  V VNQSD A IL+SS TTG+VKGVLLTH N+I+  A
Sbjct:  186 LNRSDSSSVNPFQVQVNQSDPAAILFSSGTTGRVKGVLLTHRNLIASTA 234          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL7_ORYSJ (4-coumarate--CoA ligase-like 7 OS=Oryza sativa subsp. japonica GN=4CLL7 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.873e-40
Identity = 75/168 (44.64%), Postives = 113/168 (67.26%), Query Frame = 3
Query:  174 SGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAA------PFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPPNFRT-VLVDSPEFLSLL 656
            +G+C+ TK+F S+RP +PLPP   PLS  +F  S+L +S++++++      P L++AATG  +++  FL +  +L  +L+    L   DVAF+L+P+  ++PVLYF+LLS+G VVSPANP  + +E+S  + LS  S+AFA S T+ KLP    T VL+DSP F SLL
Sbjct:   17 TGYCAATKSFRSLRPPVPLPPPDVPLSFPEFAFSLLPRSSSSSSSSLLPANPALVDAATGEAVSFQAFLSRVRALAGALRSRVGLRGGDVAFVLAPAGLDVPVLYFALLSIGAVVSPANPALTPAEVSRLVSLSGASVAFAVSSTATKLPAGLTTVVLLDSPHFRSLL 184          

HSP 2 Score: 43.1282 bits (100), Expect = 3.873e-40
Identity = 21/40 (52.50%), Postives = 26/40 (65.00%), Query Frame = 1
Query:  691 PPAVVNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVASF 810
            P  VV QS+ A I YSS TTG+VK   L H + I++VA F
Sbjct:  197 PVVVVRQSETAAIQYSSGTTGRVKAAALPHRSFIAMVAGF 236          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL6_ORYSJ (4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp. japonica GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.053e-36
Identity = 69/165 (41.82%), Postives = 99/165 (60.00%), Query Frame = 3
Query:  174 SGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAA---PFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPPNFRTVLVDSPEFLSLLS 659
            SGFC+ T+TFHS+R   PLPP   PL+V  +  S+L  +     A   P L++AATG  ++YP F+ +   L   L     L   DVA ++SPS  ++ VLYF+L+S+GVVVSPANP  +  E +HQ+ LS+P+IAF     + +LP +   V++ S  F  L S
Sbjct:   42 SGFCAATRTFHSLRSVGPLPPEELPLTVAAYAFSLLSSAPPLVVAGRGPALVDAATGIAVSYPAFVARVRFLAGGLWCSLGLRPGDVALVVSPSCLDVAVLYFALMSIGVVVSPANPASTADEYAHQVRLSRPAIAFVAPEVAARLPRHVSRVVIGSEVFDRLAS 206          

HSP 2 Score: 43.5134 bits (101), Expect = 4.053e-36
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  688 SPPAV-VNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVASF 810
            +PPAV + Q   A +LYSS TTG+VK V +TH N+I+ ++++
Sbjct:  215 APPAVAMKQPSTAALLYSSGTTGRVKAVAITHRNLIAQISAY 256          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL5_ORYSJ (4-coumarate--CoA ligase-like 5 OS=Oryza sativa subsp. japonica GN=4CLL5 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 2.025e-31
Identity = 79/212 (37.26%), Postives = 120/212 (56.60%), Query Frame = 3
Query:  162 IDPNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPPNFRTVLVDSPEFLSLLSTQHQKRRRDFSPSRRKPVRRCSHSLLFPDHWESQRRAVDSPKHNLL 797
            ID  SGFC+ T+ FHS R    LPP S P++   +  S+L  S+T    P L++AATG  ++YP FL    SL   L     L   DVA +++PS  E+PVL F+L+S+G VVSPANP+ +  E +HQ+ LS+P +AFA    + KLP + R V++ S E+  L ++     RR  +P+     +  + ++L+      + +AV     NL+
Sbjct:   15 IDSRSGFCAATRIFHSTRAPGDLPPESLPMTAAAYAFSLL-SSSTLPGRPALVDAATGIAISYPSFLAAVRSLAGGLWCSLGLRPGDVALVVAPSRLEVPVLDFALMSIGAVVSPANPVSTPEEYAHQVALSRPVVAFAAPEVAAKLPEHVRCVVIGSDEYGRLAASD---GRRAAAPAAVAVKQSDTAAVLYSSGTTGRVKAVAITHRNLI 222          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL3_ARATH (4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.245e-27
Identity = 62/169 (36.69%), Postives = 90/169 (53.25%), Query Frame = 3
Query:  135 MAGTNSNGLIDPNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPPNFRTVLVDSPE 641
            MA    + ++DP SGFC    TF+S R  + LPP+   L VT F  S   +  T       ++A+TG RLT+ +  R  + +   L     + + DV  ILSP+S  IPV+  S++SLG VV+ AN L +  EIS Q+  S P++ F TS+ + KL      VL D  +
Sbjct:    1 MAYPERDLIVDPRSGFCKSNSTFYSKRNPLCLPPNPS-LDVTTFISSQPQRGTTA-----FIDASTGHRLTFSDLWRVVDRVADCLYHEVGIRRGDVVLILSPNSIYIPVVCLSVMSLGAVVTTANTLNTSGEISKQIAQSNPTLVFTTSQLAPKLAAAISVVLTDEED 163          

HSP 2 Score: 41.9726 bits (97), Expect = 1.245e-27
Identity = 19/36 (52.78%), Postives = 26/36 (72.22%), Query Frame = 1
Query:  703 VNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVASF 810
            VNQ D A++LYSS TTG  KGV+ +H N+ + VA +
Sbjct:  196 VNQDDTAMMLYSSGTTGTSKGVISSHRNLTAYVAKY 231          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.109e-27
Identity = 63/175 (36.00%), Postives = 91/175 (52.00%), Query Frame = 3
Query:  135 MAGTNSNGLIDPNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPPNFRTVLVDSPEFLSLLS 659
            MA    + ++DP SGFC    TF+S R  + LPP+     VT F  S  H+  T       ++AATG+ LT+ +  R  + +   L     + + DV  ILSP+S  IPV+  S++SLG V + AN L +  EIS Q+  S P++ F T + + KLP     VL D   +  L S
Sbjct:    1 MAYPERSLIVDPRSGFCKSNSTFYSKRQPLSLPPNLSR-DVTTFISSQPHRGKTA-----FIDAATGQCLTFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNTSGEISKQIADSNPTLVFTTRQLAPKLPVAISVVLTDDEVYQELTS 169          

HSP 2 Score: 41.9726 bits (97), Expect = 2.109e-27
Identity = 20/36 (55.56%), Postives = 26/36 (72.22%), Query Frame = 1
Query:  703 VNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVASF 810
            VNQ D A++LYSS TTG  KGV+ +H N+ + VA F
Sbjct:  194 VNQDDTAMMLYSSGTTGPSKGVISSHRNLTAHVARF 229          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.990e-26
Identity = 62/161 (38.51%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  162 IDPNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKH-YSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLP--PNFRTVLVDS 635
            +D  SG+C+ T+TF S R  +PLP   + + V  F  S  H          L++AATGRR+T+ E  R       +L  H  SL K  VA ILSP+S   PV   + +SLG V++ ANPL + +EI+ Q+  ++P +AF T     KLP   + R VL++S
Sbjct:    9 VDARSGYCAATRTFRSRRADVPLPADPE-VDVVSFLASRRHSGVVA-----LVDAATGRRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVAALAAMSLGAVLTTANPLNTPAEIAKQVADARPVLAFTTRELLPKLPRAHDLRVVLLES 163          

HSP 2 Score: 40.4318 bits (93), Expect = 4.990e-26
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = 1
Query:  703 VNQSDAAVILYSSRTTGKVKGVLLTHPNIISLV 801
            V Q D A +LYSS TTG  KGV+ TH ++IS+V
Sbjct:  196 VTQDDPATLLYSSGTTGPSKGVVATHRSLISMV 228          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL2_ARATH (4-coumarate--CoA ligase-like 2 OS=Arabidopsis thaliana GN=4CLL2 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.491e-26
Identity = 59/161 (36.65%), Postives = 86/161 (53.42%), Query Frame = 3
Query:  162 IDPNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPP----NFRTVLVD 632
            +D  SGFC  T  F+S R  + LPP+ Q L VT F  S  H+  T       ++A TGRRL++PE       +   L     + K +V  ILSP+S   P++  S++SLG +++ ANP+ +  EIS Q+  S+P +AF T +   KL      N   VL+D
Sbjct:   21 VDRKSGFCESTSIFYSKREPMALPPN-QFLDVTSFIASQPHRGKTV-----FVDAVTGRRLSFPELWLGVERVAGCLYA-LGVRKGNVVIILSPNSILFPIVSLSVMSLGAIITTANPINTSDEISKQIGDSRPVLAFTTCKLVSKLAAASNFNLPVVLMD 174          

HSP 2 Score: 46.595 bits (109), Expect = 6.491e-26
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1
Query:  703 VNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVASF 810
            VNQ D A +LYSS TTG  KGV+L+H N+I+LV ++
Sbjct:  210 VNQDDTAALLYSSGTTGTSKGVMLSHRNLIALVQAY 245          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL8_ARATH (4-coumarate--CoA ligase-like 8 OS=Arabidopsis thaliana GN=4CLL8 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 3.033e-19
Identity = 63/228 (27.63%), Postives = 114/228 (50.00%), Query Frame = 3
Query:  150 SNGLIDPNSGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSILHKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPPNFRTVLVDS-------PEFLSLLS--TQHQKRRRDFSPSRRKPVRRCSHSLLFPDHWESQRRAVDSPKHNLLGSV 806
            S+ LIDP +GFC+   TF+S R  + LP S + L +T F  S  ++  T       ++AAT  R+++ +     + +   L     + + DV  +LSP++  IP++  S++SLG V++ ANPL + SEI  Q+  S P +AF T   + K+  +  +++++        P  L ++   T+  K+       R +  +  +  LL+      + + V+S   NL+  V
Sbjct:    7 SSSLIDPRNGFCTSNSTFYSKRKPLALP-SKESLDITTFISSQTYRGKTA-----FIDAATDHRISFSDLWMAVDRVADCLLHDVGIRRGDVVLVLSPNTISIPIVCLSVMSLGAVLTTANPLNTASEILRQIADSNPKLAFTTPELAPKIASSGISIVLERVEDTLRVPRGLKVVGNLTEMMKKEPSGQAVRNQVHKDDTAMLLYSSGTTGRSKGVNSSHGNLIAHV 228          
BLAST of DY259895 vs. ExPASy Swiss-Prot
Match: 4CLL2_ORYSJ (4-coumarate--CoA ligase-like 2 OS=Oryza sativa subsp. japonica GN=4CLL2 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.256e-18
Identity = 43/148 (29.05%), Postives = 76/148 (51.35%), Query Frame = 3
Query:  174 SGFCSQTKTFHSVRPKIPLPPSSQPLSVTQFTLSIL---HKSATTTAAPFLMNAATGRRLTYPEFLRQTNSLTLSLQKHYSLSKNDVAFILSPSSFEIPVLYFSLLSLGVVVSPANPLGSISEISHQLHLSKPSIAFATSRTSHKLPP 608
            S + + T  + S+ P +PLP S   LS+     S L   H S        L++A T   L+  +F R  +SL   L++   +++  +  +L P+S   PV + ++L+ G V +  NP  + +EI+ +L  + PS+  A++  + KLPP
Sbjct:   14 SFYSAATGLYSSLHPPLPLP-SDPSLSLVPHLFSHLPLHHHS-------LLVDAPTAATLSCADFRRLVSSLAAGLRRRLHIARGSLVLLLLPNSLTFPVAFLAVLATGAVATTMNPSSAPAEIAARLRDTAPSLVLASTHNAAKLPP 153          

HSP 2 Score: 46.595 bits (109), Expect = 2.256e-18
Identity = 23/54 (42.59%), Postives = 33/54 (61.11%), Query Frame = 1
Query:  661 LNTKNDVVISPPAVVNQSDAAVILYSSRTTGKVKGVLLTHPNIISLVASFPHVE 822
            L T  +  +     V Q DAA +LYSS T+G+ KGV++TH N+I++V  F   E
Sbjct:  182 LETDPETPVEMGVGVGQDDAAAVLYSSGTSGRSKGVVVTHRNLIAMVELFVRFE 235          
The following BLAST results are available for this feature:
BLAST of DY259895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
4CLL9_ARATH2.250e-5051.914-coumarate--CoA ligase-like 9 OS=Arabidopsis thal... [more]
4CLL7_ORYSJ3.873e-4044.644-coumarate--CoA ligase-like 7 OS=Oryza sativa sub... [more]
4CLL6_ORYSJ4.053e-3641.824-coumarate--CoA ligase-like 6 OS=Oryza sativa sub... [more]
4CLL5_ORYSJ2.025e-3137.264-coumarate--CoA ligase-like 5 OS=Oryza sativa sub... [more]
4CLL3_ARATH1.245e-2736.694-coumarate--CoA ligase-like 3 OS=Arabidopsis thal... [more]
4CLL4_ARATH2.109e-2736.004-coumarate--CoA ligase-like 4 OS=Arabidopsis thal... [more]
4CLL4_ORYSJ4.990e-2638.514-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
4CLL2_ARATH6.491e-2636.654-coumarate--CoA ligase-like 2 OS=Arabidopsis thal... [more]
4CLL8_ARATH3.033e-1927.634-coumarate--CoA ligase-like 8 OS=Arabidopsis thal... [more]
4CLL2_ORYSJ2.256e-1829.054-coumarate--CoA ligase-like 2 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259895 ID=DY259895; Name=DY259895; organism=Citrus clementina; type=EST; length=1009bp
CAATAATCGATACCATGCATGAAAAGAAAAAATCTGTAGCAGCCGTCGCA
GGTTCATGATCACCGTTTAATCATCATCCTTTGACTTAAAATCTTCTCTG
CTATTGTCTCTCAGTTCGATTTGAATCTCAATTTATGGCGGGGACAAACA
GCAACGGTCTGATTGATCCAAACAGCGGCTTTTGTTCACAGACGAAAACA
TTCCACAGCGTAAGACCAAAGATTCCTCTGCCGCCATCGTCTCAGCCTCT
CTCCGTCACACAATTCACTTTATCGATCCTCCACAAATCAGCCACCACGA
CCGCCGCACCATTTCTGATGAACGCCGCCACCGGTCGACGCCTCACTTAC
CCTGAGTTCCTCCGCCAAACCAACTCCCTCACGCTCTCCCTCCAAAAGCA
TTACTCTCTCTCCAAGAACGACGTCGCCTTCATCCTCTCCCCTTCCTCTT
TCGAGATCCCCGTCCTCTACTTCTCCCTTCTCTCCCTCGGCGTGGTCGTC
TCTCCCGCCAACCCGCTGGGGTCCATCTCAGAAATATCTCATCAACTCCA
CCTGAGCAAACCTTCAATCGCCTTCGCCACGTCACGCACCTCCCACAAGC
TCCCGCCAAACTTCCGCACAGTCCTCGTCGACTCCCCGGAGTTCCTCTCG
CTGTTATCAACTCAACACCAAAAACGACGTCGTGATTTCTCCCCCAGCCG
TCGTAAACCAGTCAGACGCTGCAGTCATTCTTTACTCTTCCCGGACCACT
GGGAAAGTCAAAGGCGTGCTGTTGACTCACCCAAACATAATCTCCTTGGT
AGCGTCGTTCCCCCATGTCGAGTACGGGGCAAATCCAACTGAACAACCAC
CGCCCGTCGGGTGAAGGTTTCTTTAATAACCCTGCCCTCTGTTTTCCCTT
TTTTGGCCTTCCCAACCGTTAGTGGAAGGTGGGTTGCTGGCCAGTGAAAA
CTGCCGGCCTTCAGGGAAAAAAATTTAATTTTGAAAAAGAAATGTTAAAA
AACCGTGGA
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