DY259896

Overview
NameDY259896
Unique NameDY259896
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length917
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY259896_ssr82 microsatellite DY259896_ssr82:82..101. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259896 vs. ExPASy Swiss-Prot
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.980e-18
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:  409 MAEEHRCQAPRLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTL 570
            MAEEHR Q PRLC NNCGFFGS  TQNLCSKCFRDLQ + Q SS+AKHAL Q+L
Sbjct:    1 MAEEHRLQEPRLCANNCGFFGSTATQNLCSKCFRDLQHQEQNSSTAKHALTQSL 54
[Close]
BLAST of DY259896 vs. ExPASy Swiss-Prot
Match: SAP4_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.300e-13
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:  409 MAEEHRCQAP---RLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSAKHALNQTL 570
            MAEEHRC+ P   RLCVNNCGFFGS  T NLCS C+ DL LK QQ +S K  +  +L
Sbjct:    1 MAEEHRCETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSL 57
[Close]
BLAST of DY259896 vs. ExPASy Swiss-Prot
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana GN=SAP6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.333e-12
Identity = 34/49 (69.39%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  409 MAEEHRCQAP---RLCVNNCGFFGSPTTQNLCSKCFRDLQLKAQQSSSA 546
            MAEEHRCQ P   RLCVNNCGF GS  T NLCS C+ DL LK QQ SS+
Sbjct:    1 MAEEHRCQTPESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSSS 49
The following BLAST results are available for this feature:
BLAST of DY259896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SAP3_ARATH4.980e-1877.78Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP4_ARATH6.300e-1361.40Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP6_ARATH5.333e-1269.39Zinc finger A20 and AN1 domain-containing stress-a... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YI21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259896 ID=DY259896; Name=DY259896; organism=Citrus clementina; type=EST; length=917bp
GTTTCTTTTTCCTTGGAGCTGCCTTCCTTCATAAAAAGAGAAACCCTGCT
TTCCTTTCTTTGCCAAAACTCCTTTGCCTTCCTTTCTTTCTTTCTTTCTT
TCCAAAATCCCAATTGCCAAACAGAAGATAAAGACTAATCCTCCTTATAT
ATTTCCTTTCCAGTCGTCCCTCTTTTGAAAAATCAATCAATTTCAGCAAA
TTATTCCTGAAAATATTGTTTACAGGTAATGATAAATTTTTGTATTAGTT
TCTCATAAATAGTTTTTTTTTTTTTTTGGGTTAATCCATTAACTTGATTT
CAAATAGGAATAATATGGATAGAATCGAAGTCTTATAAATTTTTATATTA
GCTTGCAAGATTTCAATCAACTGATTTGGAATGGAAAATTTTGCTGTAAA
GGTTGAAGATGGCGGAAGAGCACAGATGTCAAGCACCCCGTTTGTGCGTG
AACAACTGCGGATTTTTCGGGAGCCCAACAACTCAAAATCTCTGCTCCAA
ATGTTTTCGCGATCTTCAGTTGAAAGCACAACAATCTTCCTCGGCCAAAC
ACGCCCTTAACCAAACCCTGATTTCTTCGTCGTCGTCCTCGCCGTCGCCG
TCGGTTGATTTGTCTCTGCGCGAAAAAACGGCGACGGATGTGGAAGGTAC
CGGCAAAGGGGAAAAACCCGCCGGCGAAGTGGCCCCTCCGGTTCAGTCCA
CGGGCGGAAACAGGAGATTAATTGTAGGAACGCCCGGGGGCCAACGGGTT
CAACCGTAAGGCCGGTATCGTGTTTCTCTCGAACCAACGGTACCGCGAGC
GAACCTGTGCTCATAAATTTAAAAAATAATAAAAATTTTTACACTAACAA
CCTTCCCGGTACCCTACATAAAAGCATTTCCAGACAATACCGAACCAATC
TACTATATCAAATCTAA
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