DY259898

Overview
NameDY259898
Unique NameDY259898
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY259898 vs. ExPASy Swiss-Prot
Match: BT1_MAIZE (Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.641e-15
Identity = 44/135 (32.59%), Postives = 78/135 (57.78%), Query Frame = 1 
Query:    4 LAPFETIRTRMVVG-VGSKNISGSFIEVFEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHDVHP*FEH 405
            +AP ETIRT ++VG +G  +++G F  + + +GW GL+ GN +N+LR+ P++AIE  T++  K+ +T        +E PK+ I    ++ +L+  +            STL  +P+E++K R+T+  DV+    H
Sbjct:  152 VAPLETIRTHLMVGSIGVDSMAGVFQWIMQNEGWTGLFRGNAVNVLRVAPSKAIEHFTYDTAKKFLTP-----KGDEPPKIPIPTPLVAGALAGFA------------STLCTYPMELIKTRVTIEKDVYDNVAH 269

HSP 2 Score: 25.0238 bits (53), Expect = 4.641e-15
Identity = 10/28 (35.71%), Postives = 17/28 (60.71%), Query Frame = 2 
Query:  407 AISKIYKEGGIGAFYAGISTTLIGTLPH 490
            A  KI ++ G    Y G++ +LIG +P+
Sbjct:  270 AFVKILRDEGPSELYRGLTPSLIGVVPY 297
The following BLAST results are available for this feature:
BLAST of DY259898 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BT1_MAIZE4.641e-1532.59Protein brittle-1, chloroplastic/amyloplastic OS=Z... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP10YI23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259898 ID=DY259898; Name=DY259898; organism=Citrus clementina; type=EST; length=974bp
GTTCTTGCTCCTTTTGAGACCATCAGGACGAGAATGGTGGTTGGTGTTGG
ATCCAAAAATATTTCTGGTAGTTTCATTGAAGTATTTGAGCAGCAGGGTT
GGCAAGGACTATGGGCTGGCAATGGAATTAATATGCTCCGAATAATCCCC
ACCCAGGCAATTGAGCTTGGAACATTTGAGTGTGTCAAACGAGCTATGAC
TACGGCACAAGAGAAATGGAGTCAGGAGGAATGCCCAAAAGTGCAAATTG
GTCCTCTCAGTTTGAGTTTTTCTCTCTCCTGGATTTCTCCTGTTGCCGTG
GCTGGTGCAGCTGCTGGAGTTGTTAGCACGCTTGCGTGCCATCCTCTTGA
AGTATTGAAGGATCGGTTGACTGTAAGTCATGATGTGCACCCCTAGTTTG
AGCATTGCAATTAGCAAAATATATAAAGAGGGTGGAATTGGCGCCTTTTA
CGCCGGTATTTCAACTACGTTGATTGGCACGCTCCCCCATACTACCTTGT
ATACCCACTTTATGTCACAAAACATAGAAAAAAAAAACACTCCCAACCCC
CAATAAATCACAGAGCCCCCACACCCAACCGGAAAACCCAGCCCCCAGAC
AGACCTCATACGCCTTAAAAGCTCGCAACCCCACCCGAACCCCGCAACCT
CACCATAAGCCCGAATAAAAAAAATAAAATACCCAATGAATAAACATCCC
CACACACAAGTCAAAGACCCCACACACCACGACACGAATATCAAAACACG
ACCGGCCCCCCCACTCTTCCCGCACCTCCCCACTCCCCTGCCATCCCCTC
GCGTATCCACCCCGTTCCAGCTCTATTATCTCCTTTGCGTAATTCTCACT
TATACCATGCCATCAACCTTGCTACTTTCAACCCCCCACAGCAAACGCAC
CCTTTTTGTAATCCCCACCCATCCTCCTCCCTGCCTCGCCCCACCACACC
TCACCCCTCCCTCATCCTATATCC
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