DY259907

Overview
NameDY259907
Unique NameDY259907
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length955
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1349 contig Ccv1_Contig1349:1..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 7.563e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKA+NGVVIATEKKLPSILVDE+SV KIQSLTPNIGVVYSGMGPDFRV VRKS
Sbjct:    1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKS 90          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 7.563e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKA+NGVVIATEKKLPSILVDE+SV KIQSLTPNIGVVYSGMGPDFRV VRKS
Sbjct:    1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKS 90          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.290e-40
Identity = 86/90 (95.56%), Postives = 87/90 (96.67%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE+SV KIQ LTPNIGVVYSGMGPDFRV VRKS
Sbjct:    1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKS 90          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.753e-40
Identity = 85/90 (94.44%), Postives = 86/90 (95.56%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKS 306
            MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDE+SV KIQ LTPNIG VYSGMGPDFRV VRKS
Sbjct:    1 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKS 90          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 4.599e-30
Identity = 67/94 (71.28%), Postives = 78/94 (82.98%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLA 318
            M D  YSFSLTTFSPSGKLVQIE+AL AV +G  S+GIKASNGVV+ATEKK  SIL DE SVHKI+ +T +IG+VYSGMGPD+RV VR++  LA
Sbjct:    1 MADRGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLA 94          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.133e-28
Identity = 63/94 (67.02%), Postives = 77/94 (81.91%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLA 318
            M +  YSFSLTTFSPSGKLVQIE+AL AV +G  S+GIKA+NGVV+ATEKK  SIL DE S HK++ +T +IG+VYSGMGPD+RV VR++  LA
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKATNGVVLATEKKQKSILYDEQSAHKVEPITKHIGMVYSGMGPDYRVLVRRARKLA 94          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 2.523e-28
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLA 318
            M +  YSFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA+NGVV+ATEKK  SIL DE SVHK++ +T +IG+VYSGMGPD+RV V ++  LA
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLA 94          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.523e-28
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLA 318
            M +  YSFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA+NGVV+ATEKK  SIL DE SVHK++ +T +IG+VYSGMGPD+RV V ++  LA
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLA 94          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 2.523e-28
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLA 318
            M +  YSFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA+NGVV+ATEKK  SIL DE SVHK++ +T +IG+VYSGMGPD+RV V ++  LA
Sbjct:    1 MAERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLA 94          
BLAST of DY259907 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 5.622e-28
Identity = 63/94 (67.02%), Postives = 75/94 (79.79%), Query Frame = 1
Query:   37 MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDESSVHKIQSLTPNIGVVYSGMGPDFRVCVRKSTTLA 318
            M    YSFSLTTFSPSGKLVQIE+AL AV  G  S+GIKA+NGVV+ATEKK  SIL DE SVHK++ +T +IG+VYSGMGPD+RV V ++  LA
Sbjct:    1 MAKRGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLA 94          
The following BLAST results are available for this feature:
BLAST of DY259907 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
PSA2_ORYSJ7.563e-4195.56Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI7.563e-4195.56Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2A_ARATH1.290e-4095.56Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA2B_ARATH3.753e-4094.44Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA2_CARAU4.599e-3071.28Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA2_XENLA1.133e-2867.02Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA2_RAT2.523e-2867.02Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_HUMAN2.523e-2867.02Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN2.523e-2867.02Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSA2_MOUSE5.622e-2867.02Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259907 ID=DY259907; Name=DY259907; organism=Citrus clementina; type=EST; length=955bp
CGATTCGATCTCCTTTTCTTTTTTAATTTAAAAAAAATGGGTGATAGTCA
GTATTCGTTCTCTTTGACCACTTTCAGTCCTTCTGGGAAGCTTGTTCAGA
TTGAACATGCCTTAACAGCTGTTGGATCCGGCCAAACATCTCTGGGAATC
AAAGCTTCTAATGGTGTTGTCATTGCTACGGAGAAGAAACTACCGTCTAT
TTTGGTTGATGAATCATCAGTTCATAAGATTCAGTCATTAACACCAAACA
TTGGAGTTGTATACAGTGGGATGGGTCCCGATTTCCGGGTCTGTGTACGA
AAAAGCACCACCCTAGCCTACCGGAACGCCCACTAACAGGGGACCCAAAC
CCCCGTAAAAAAATTTAAGAGGTACCGCTGCGGGCACTGGGGATAACACG
CAAAACCGAAAATTGTCAACGAGTTTGCATCTCAAATATATGGAACCTTT
TGCGAAAAGGGTGGACCTTAACTTATGACCGACAAAAAAACTCTCACTTC
TATTTGATTCAGCAAAAGGGTGGGGAGGTTTAAATGAAGAGCACCTCTCA
CAAACTCGAATGAGCTGGTATAAAAAAAATCACACAGATCTCAAAAAACC
GGGGTCTTATTCCGCGCAACACTCCAACGCACTGTAAAATAGGACTGTGA
ACCCTTTCTATAAACAAAATACAAAAAATCATCCCCCCCTACAGAAACTA
AGAAAAATTTCTCAAGAACCGTCACCCACTACCCACACACCCCACGAAAA
AACATATCACTTCACCTGCACACAAGAGACTAGTCTGCAGCTCGGAATAG
AGAAAAAAGGGTCCTTGACAGCAAGACTTCTGGCAGCTCCCTGATACAAA
ATTTTTAGTATACTTTACCACAAAACCAGTGATCAACATAGTTCCCCGAT
AACTAGATAGACGAAATTTTTAACATAAATACAAACACCAACACAATCCT
CCCCC
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